Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 1.6e-219 765.8 382 100.0
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 3.5e-206 721.5 393 91.6
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 4.6e-182 641.3 394 82.2
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 6.2e-155 551.2 389 68.9
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 1.4e-154 550.1 380 70.5
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 1.8e-154 549.7 393 69.5
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 5.4e-151 538.1 394 67.3
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 4.6e-150 535.0 392 66.8
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.3e-149 533.5 393 66.9
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 5.1e-149 531.6 392 66.1
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 6.7e-149 531.2 392 66.8
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 1.5e-148 530.0 379 66.5
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 1.9e-148 529.6 381 68.0
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 3.3e-148 528.9 383 68.1
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 5.6e-148 528.1 391 65.5
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 9.6e-148 527.3 389 67.4
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 1.3e-147 526.9 393 66.7
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.8e-147 525.8 393 65.9
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 2.8e-147 525.8 390 65.9
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 3.7e-147 525.4 393 64.6
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.8e-147 525.0 393 65.9
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.8e-146 523.1 393 65.6
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 1.5e-145 520.0 393 66.4
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 2.0e-145 519.6 391 65.5
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 2.6e-145 519.2 404 64.1
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 2.6e-145 519.2 391 64.7
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 2.6e-145 519.2 394 64.5
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 4.5e-145 518.5 396 64.1
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 2.9e-144 515.8 389 65.0
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 8.4e-144 514.2 391 64.5
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 1.4e-143 513.5 393 65.4
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 2.5e-143 512.7 389 66.1
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 2.5e-143 512.7 396 64.1
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 5.5e-143 511.5 448 59.4
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 2.1e-142 509.6 415 62.9
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 2.1e-142 509.6 391 64.2
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 7.9e-142 507.7 409 63.6
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 1.0e-141 507.3 393 63.9
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 1.1e-140 503.8 389 64.3
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 1.9e-140 503.1 389 65.0
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 7.4e-140 501.1 391 62.4
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 7.4e-140 501.1 393 62.6
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 7.4e-140 501.1 390 62.6
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 1.3e-139 500.4 393 62.3
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 3.7e-139 498.8 379 65.4
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 8.2e-139 497.7 388 62.1
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 3.1e-138 495.7 408 60.8
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 4.0e-138 495.4 391 62.4
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 6.9e-138 494.6 393 62.6
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 3.4e-137 492.3 380 62.9
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 7.6e-137 491.1 468 56.6
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 7.6e-137 491.1 392 62.5
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 1.0e-136 490.7 369 64.5
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 2.2e-136 489.6 386 61.9
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 5.5e-135 485.0 395 61.3
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 7.1e-135 484.6 392 62.2
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 9.3e-135 484.2 395 62.5
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 1.2e-134 483.8 390 61.0
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 3.5e-134 482.3 391 61.9
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.5e-134 482.3 428 57.9
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.5e-134 482.3 428 58.4
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 6.1e-134 481.5 394 60.7
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 1.3e-133 480.3 392 60.7
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 1.8e-133 479.9 393 61.3
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 2.3e-133 479.6 391 61.9
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 3.0e-133 479.2 390 61.5
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 3.0e-133 479.2 368 64.9
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 3.0e-133 479.2 391 60.9
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 3.9e-133 478.8 385 61.0
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 1.1e-132 477.2 393 60.6
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 4.3e-132 475.3 393 60.8
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 3.7e-131 472.2 357 66.1
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 4.8e-131 471.9 392 61.0
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 8.2e-131 471.1 393 60.6
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 3.1e-130 469.2 391 60.4
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 2.0e-129 466.5 370 63.5
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 3.4e-129 465.7 393 60.3
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 3.4e-129 465.7 393 60.6
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 1.9e-127 459.9 502 49.0
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.5e-124 450.3 393 58.3
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 5.9e-121 438.3 394 57.1
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 7.7e-121 438.0 358 61.7
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.7e-120 436.8 421 55.1
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 3.0e-117 426.0 442 51.6
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 9.7e-116 421.0 331 61.9
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 1.5e-113 413.7 377 55.2
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 1.1e-106 391.0 393 51.9
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 9.1e-106 387.9 351 55.6
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 2.5e-103 379.8 313 60.4
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 4.7e-102 375.6 345 54.5
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 4.7e-102 375.6 272 65.8
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 4.4e-100 369.0 272 64.7
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 9.4e-95 351.3 399 46.9
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 9.4e-95 351.3 397 48.1
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 8.0e-94 348.2 297 60.9
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 2.4e-90 336.7 400 45.5
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 7.0e-82 308.5 393 43.3
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 2.5e-79 300.1 217 65.4
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 3.3e-79 299.7 248 62.5
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 1.4e-74 284.3 292 50.3
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 7.0e-74 282.0 231 61.9
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 3.3e-71 273.1 232 59.5
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 1.2e-68 264.6 193 67.4
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 4.4e-68 262.7 481 34.5
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 1.4e-66 257.7 370 39.2
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 1.2e-54 218.0 320 38.1
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 2.1e-41 174.1 535 26.4
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 2.7e-41 173.7 130 67.7
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 2.3e-40 170.6 140 61.4
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 6.7e-32 142.5 108 65.7
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 1.8e-29 134.4 80 77.5
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.5e-28 131.3 97 68.0
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.6e-28 130.6 105 62.9
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.4e-28 130.2 97 67.0
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.4e-28 130.2 97 67.0
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.4e-28 130.2 97 67.0
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 4.5e-28 129.8 104 56.7
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 7.6e-28 129.0 79 75.9
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.3e-27 128.3 105 62.9
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.7e-27 127.9 97 66.0
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.2e-27 127.5 97 66.0
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.1e-26 125.2 105 60.0
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 3.0e-24 117.1 171 41.5
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 9.6e-23 112.1 82 68.3
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 2.8e-22 110.5 182 34.1
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.8e-21 107.8 74 68.9
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 5.9e-20 102.8 108 51.9
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 6.5e-19 99.4 60 76.7
PRCOL_00001496 Prasinoderma coloniale HOM05D002536 ORTHO05D006290 6.5e-19 99.4 270 29.3
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 1.9e-18 97.8 69 62.3
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-17 95.1 126 42.1
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.3e-16 91.7 66 68.2
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.3e-16 91.7 66 68.2
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.9e-16 90.1 66 66.7
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 5.1e-16 89.7 256 30.5
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 7.4e-15 85.9 47 91.5
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.7e-14 83.6 66 65.2
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 3.7e-14 83.6 71 52.1
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 6.3e-14 82.8 62 67.7
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 6.9e-13 79.3 53 71.7
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 1.0e-11 75.5 58 62.1
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.9e-11 73.9 112 40.2
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 4.6e-09 66.6 71 46.5
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 3.0e-08 63.9 58 44.8
ClCG05G010870 Citrullus lanatus HOM05D002536 ORTHO05D150093 2.2e-06 57.8 85 42.4
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 2.8e-06 57.4 34 76.5


User provided reference genes

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