Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 7.9e-180 634.0 412 100.0
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 3.4e-167 592.0 412 94.2
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 7.2e-149 531.2 417 84.4
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 1.6e-132 476.9 412 77.9
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 8.0e-108 394.8 416 59.6
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.0e-107 394.4 416 62.7
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.8e-107 393.7 416 63.0
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 2.4e-104 383.3 420 59.5
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 3.5e-103 379.4 412 61.2
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 3.5e-103 379.4 418 64.8
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 6.0e-103 378.6 412 51.5
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 1.1e-101 374.4 415 57.8
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 1.6e-100 370.5 412 60.2
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 2.1e-100 370.2 410 59.5
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 2.3e-99 366.7 416 62.7
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 8.9e-99 364.8 415 54.0
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.2e-97 360.1 417 58.5
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 2.2e-97 360.1 413 60.5
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 2.2e-97 360.1 413 59.6
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 1.4e-96 357.5 415 53.7
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 1.2e-95 354.4 412 57.8
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 1.6e-95 354.0 414 56.3
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 2.7e-95 353.2 420 56.2
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 3.5e-95 352.8 419 55.1
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.3e-94 350.9 418 62.0
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 1.2e-92 344.4 412 60.4
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.1e-92 343.6 406 53.2
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 8.1e-92 341.7 425 52.5
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 8.1e-92 341.7 414 47.6
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.2e-90 337.8 415 57.8
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 4.4e-90 335.9 430 60.0
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 4.4e-90 335.9 412 50.2
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 9.9e-90 334.7 421 51.8
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 8.4e-89 331.6 412 47.8
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 8.4e-89 331.6 412 52.7
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 7.8e-87 325.1 415 46.5
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.0e-86 324.7 434 53.7
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.7e-86 323.9 414 55.6
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 8.6e-86 321.6 428 52.1
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.9e-85 320.5 418 49.0
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 8.1e-84 315.1 414 50.2
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 5.8e-82 308.9 413 45.8
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 5.8e-82 308.9 412 50.0
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 7.6e-82 308.5 436 49.3
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.4e-80 304.3 412 50.7
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 5.4e-80 302.4 412 50.2
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 7.1e-80 302.0 419 44.4
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 2.1e-79 300.4 414 46.4
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 1.0e-78 298.1 424 50.7
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 1.3e-78 297.7 421 54.2
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 2.3e-78 297.0 412 54.4
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 7.3e-77 292.0 418 50.5
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.6e-76 290.8 415 48.4
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 2.4e-75 287.0 423 49.9
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 6.9e-75 285.4 418 43.8
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 9.0e-75 285.0 416 44.0
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 4.4e-74 282.7 420 52.4
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 1.9e-72 277.3 414 42.5
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 1.3e-68 264.6 412 48.8
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 1.2e-63 248.1 414 45.4
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 1.6e-60 237.7 415 44.6
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.8e-60 236.1 414 50.7
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.8e-60 236.1 414 50.7
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 4.0e-59 233.0 421 40.4
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 3.0e-54 216.9 258 44.2
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 3.0e-54 216.9 413 45.0
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 3.7e-52 209.9 414 43.0
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.4e-51 208.0 479 44.1
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 5.3e-51 206.1 345 48.7
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.0e-49 201.8 341 44.3
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.9e-48 197.6 305 41.0
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 6.7e-46 189.1 240 60.0
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.5e-42 177.9 155 54.8
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 5.0e-41 172.9 456 35.1
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 1.1e-40 171.8 123 61.8
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.4e-40 171.4 123 59.3
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 1.0e-38 165.2 132 56.1
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 1.0e-38 165.2 132 56.1
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 1.0e-38 165.2 150 52.0
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.0e-38 165.2 125 56.8
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 2.3e-38 164.1 125 56.8
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 3.9e-38 163.3 157 51.0
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 3.9e-38 163.3 150 51.3
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 3.9e-38 163.3 150 51.3
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 5.1e-38 162.9 122 57.4
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 6.7e-38 162.5 153 51.6
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 6.7e-38 162.5 154 51.9
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 6.7e-38 162.5 138 52.2
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 8.8e-38 162.2 283 36.0
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.5e-37 161.4 152 50.7
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 1.5e-37 161.4 139 52.5
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 2.6e-37 160.6 149 51.7
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 2.6e-37 160.6 153 50.3
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 2.6e-37 160.6 266 37.6
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 3.3e-37 160.2 141 51.8
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 3.3e-37 160.2 149 51.0
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.3e-37 160.2 284 35.9
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 3.3e-37 160.2 145 50.3
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 3.3e-37 160.2 145 50.3
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 4.3e-37 159.8 144 51.4
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 4.3e-37 159.8 283 35.7
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 4.3e-37 159.8 277 38.3
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 5.7e-37 159.5 157 47.8
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 5.7e-37 159.5 121 57.9
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 7.4e-37 159.1 282 36.9
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 7.4e-37 159.1 140 52.1
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 9.7e-37 158.7 123 56.9
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 9.7e-37 158.7 156 50.0
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 9.7e-37 158.7 156 50.0
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 1.3e-36 158.3 130 54.6
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 1.3e-36 158.3 150 50.7
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 1.7e-36 157.9 123 56.9
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 2.2e-36 157.5 122 57.4
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 2.2e-36 157.5 168 45.8
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.2e-36 157.5 125 56.8
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 2.2e-36 157.5 131 54.2
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 2.8e-36 157.1 122 57.4
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 2.8e-36 157.1 278 36.7
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 3.7e-36 156.8 156 49.4
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 3.7e-36 156.8 284 35.6
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 4.8e-36 156.4 268 36.2
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 4.8e-36 156.4 142 50.7
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 6.3e-36 156.0 154 48.7
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 6.3e-36 156.0 153 49.7
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 8.2e-36 155.6 154 51.3
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 8.2e-36 155.6 169 45.6
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 1.1e-35 155.2 154 49.4
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 1.1e-35 155.2 123 56.1
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 1.1e-35 155.2 126 53.2
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 1.1e-35 155.2 115 58.3
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.4e-35 154.8 271 34.3
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 2.4e-35 154.1 124 54.0
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 4.1e-35 153.3 121 54.5
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 6.9e-35 152.5 273 35.2
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 6.9e-35 152.5 280 33.9
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 9.1e-35 152.1 140 50.0
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.2e-34 151.8 115 57.4
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.0e-34 151.0 150 48.0
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 2.0e-34 151.0 273 34.8
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 3.4e-34 150.2 281 33.8
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 5.9e-34 149.4 142 47.9
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 7.7e-34 149.1 341 48.1
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.7e-33 147.9 271 33.9
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 2.9e-33 147.1 137 48.9
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 1.4e-32 144.8 100 62.0
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 2.5e-32 144.1 296 34.8
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 1.2e-31 141.7 123 52.0
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 3.6e-31 140.2 344 35.2
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 4.4e-29 133.3 102 57.8
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 9.7e-29 132.1 118 50.8
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 9.7e-29 132.1 102 57.8
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 9.7e-29 132.1 102 57.8
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.3e-28 131.7 94 60.6
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 6.3e-28 129.4 391 34.0
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 1.8e-27 127.9 103 54.4
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 5.5e-24 116.3 184 49.5
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 8.8e-22 109.0 330 27.6
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 9.7e-21 105.5 92 56.5
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 1.2e-13 82.0 250 27.2
Peaxi162Scf00013g03225 Petunia axillaris HOM05D004237 ORTHO05D005002 5.4e-11 73.2 43 79.1
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 1.4e-06 58.5 186 27.4


User provided reference genes

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