Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020113.2 Cucumis melo HOM05D006817 ORTHO05D008603 5.5e-276 953.7 505 100.0
CsaV3_5G010750 Cucumis sativus L. HOM05D006817 ORTHO05D008603 5.0e-269 930.6 505 97.2
ClCG07G004850 Citrullus lanatus HOM05D006817 ORTHO05D008603 3.8e-261 904.4 505 94.1
Sed0020006 Sechium edule HOM05D006817 ORTHO05D008603 2.3e-245 852.0 502 88.2
GSVIVG01032704001 Vitis vinifera HOM05D006817 ORTHO05D008603 1.1e-191 673.7 505 72.5
TAR623G0065 Trochodendron aralioides HOM05D006817 ORTHO05D008603 2.7e-190 669.1 507 71.8
Ciclev10031264m.g Citrus clementina HOM05D006817 ORTHO05D008603 3.5e-190 668.7 512 70.7
Atru.chr12.157 Acer truncatum HOM05D006817 ORTHO05D008603 6.7e-189 664.5 506 70.9
Potri.019G048700 Populus trichocarpa HOM05D006817 ORTHO05D008603 8.1e-187 657.5 503 70.4
TWI09G1614 Tripterygium wilfordii HOM05D006817 ORTHO05D008603 5.3e-186 654.8 506 69.4
arahy.Tifrunner.gnm1.ann1.6ZT9VY Arachis hypogaea HOM05D006817 ORTHO05D008603 9.0e-186 654.1 502 69.3
MD01G1164100 Malus domestica HOM05D006817 ORTHO05D008603 1.5e-185 653.3 505 71.3
arahy.Tifrunner.gnm1.ann1.6QBV89 Arachis hypogaea HOM05D006817 ORTHO05D008603 2.0e-185 652.9 502 69.3
Thecc.10G176900 Theobroma cacao HOM05D006817 ORTHO05D008603 1.9e-183 646.4 508 70.1
Actinidia00992 Actinidia chinensis HOM05D006817 ORTHO05D008603 7.1e-183 644.4 504 68.3
CSS0030257 Camellia sinensis var. sinensis HOM05D006817 ORTHO05D008603 9.3e-183 644.0 507 69.4
Prupe.2G261900 Prunus persica HOM05D006817 ORTHO05D008603 9.3e-183 644.0 507 70.8
Aqoxy4G02362 Aquilegia oxysepala HOM05D006817 ORTHO05D008603 6.0e-182 641.3 504 69.4
Phvul.001G074700 Phaseolus vulgaris HOM05D006817 ORTHO05D008603 1.3e-181 640.2 504 69.2
Lj5g0023407 Lotus japonicus HOM05D006817 ORTHO05D008603 3.9e-181 638.6 498 68.3
Gohir.A10G180300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 1.5e-180 636.7 502 69.3
Gorai.011G210100 Gossypium raimondii HOM05D006817 ORTHO05D008603 2.5e-180 636.0 502 69.1
Medtr1g007630 Medicago truncatula HOM05D006817 ORTHO05D008603 4.3e-180 635.2 495 68.5
Migut.F00593 Erythranthe guttata HOM05D006817 ORTHO05D008603 9.6e-180 634.0 502 68.5
Nn2g10348 Nelumbo nucifera HOM05D006817 ORTHO05D008603 1.6e-179 633.3 503 68.2
Psat6g035880 Pisum sativum HOM05D006817 ORTHO05D008603 1.6e-179 633.3 495 68.1
PGR044G0301 Punica granatum HOM05D006817 ORTHO05D008603 1.6e-179 633.3 506 68.8
Glyma.19G067100 Glycine max HOM05D006817 ORTHO05D008603 2.1e-179 632.9 498 69.7
THA.LOC104816518 Tarenaya hassleriana HOM05D006817 ORTHO05D008603 2.8e-179 632.5 498 69.7
Oeu036532.1 Olea europaea HOM05D006817 ORTHO05D008603 1.8e-178 629.8 502 68.7
TPR.G24539 Trifolium pratense HOM05D006817 ORTHO05D008603 5.3e-178 628.2 495 68.5
Rhsim09G0184300 Rhododendron simsii HOM05D006817 ORTHO05D008603 5.0e-176 621.7 515 66.6
Thhalv10013352m.g Eutrema salsugineum HOM05D006817 ORTHO05D008603 6.5e-176 621.3 502 69.1
Eucgr.J00131 Eucalyptus grandis HOM05D006817 ORTHO05D008603 1.1e-175 620.5 496 68.5
CAN.G169.4 Capsicum annuum HOM05D006817 ORTHO05D008603 3.5e-174 615.5 503 66.8
Peaxi162Scf00739g00017 Petunia axillaris HOM05D006817 ORTHO05D008603 3.5e-174 615.5 521 66.0
MSTRG.27274 Avicennia marina HOM05D006817 ORTHO05D008603 6.1e-174 614.8 501 66.7
Sopen06g015650 Solanum pennellii HOM05D006817 ORTHO05D008603 7.9e-174 614.4 499 67.3
Gohir.D10G187300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 1.0e-173 614.0 502 67.1
Solyc06g050210.3 Solanum lycopersicum HOM05D006817 ORTHO05D008603 1.3e-173 613.6 499 67.3
PSO170G5674 Papaver somniferum HOM05D006817 ORTHO05D008603 1.8e-173 613.2 510 65.3
BcaC06g32240 Brassica carinata HOM05D006817 ORTHO05D008603 3.0e-173 612.5 495 68.1
A10p30880 Brassica napus HOM05D006817 ORTHO05D008603 3.0e-173 612.5 493 68.8
MBI15_g27349_MAGBIO Magnolia biondii HOM05D006817 ORTHO05D008603 6.7e-173 611.3 565 60.7
Nitab4.5_0011715g0010 Nicotiana tabacum HOM05D006817 ORTHO05D008603 1.5e-172 610.1 503 66.6
BraA10t45133Z Brassica rapa HOM05D006817 ORTHO05D008603 4.3e-172 608.6 504 68.3
BolC9t59902H Brassica oleracea HOM05D006817 ORTHO05D008603 7.4e-172 607.8 501 67.7
C09p71390 Brassica napus HOM05D006817 ORTHO05D008603 9.7e-172 607.4 495 67.9
Sp6g37510 Schrenkiella parvula HOM05D006817 ORTHO05D008603 1.3e-171 607.1 500 66.4
EL10Ac2g04256 Beta vulgaris HOM05D006817 ORTHO05D008603 4.1e-170 602.1 494 66.4
COL.COLO4_10038 Corchorus olitorius HOM05D006817 ORTHO05D008603 5.3e-170 601.7 485 68.5
Lalb_Chr22g0360921 Lupinus albus HOM05D006817 ORTHO05D008603 2.0e-169 599.7 494 66.2
ECA232G4264 Erigeron canadensis HOM05D006817 ORTHO05D008603 2.2e-168 596.3 510 64.1
Cc02_g05530 Coffea canephora HOM05D006817 ORTHO05D008603 1.4e-167 593.6 508 65.9
vmacro09974 Vaccinium macrocarpon HOM05D006817 ORTHO05D008603 3.2e-167 592.4 515 64.5
Sc11g0005730 Simmondsia chinensis HOM05D006817 ORTHO05D008603 5.5e-167 591.7 494 65.4
Manes.10G004900 Manihot esculenta HOM05D006817 ORTHO05D008603 1.6e-166 590.1 506 64.8
Ah.16g104230 Amaranthus hybridus HOM05D006817 ORTHO05D008603 6.1e-166 588.2 527 61.9
Cpa.g.sc19.86 Carica papaya HOM05D006817 ORTHO05D008603 6.1e-166 588.2 503 64.2
Lsat_1_v5_gn_9_59361 Lactuca sativa HOM05D006817 ORTHO05D008603 6.1e-166 588.2 511 63.6
ATR0681G057 Amborella trichopoda HOM05D006817 ORTHO05D008603 1.0e-165 587.4 500 65.2
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.5e-164 583.6 504 66.3
HanXRQChr15g0493791 Helianthus annuus HOM05D006817 ORTHO05D008603 6.3e-163 578.2 479 66.2
CDE04G2280 Ceratophyllum demersum HOM05D006817 ORTHO05D008603 8.2e-163 577.8 500 62.6
DCAR_014588 Daucus carota HOM05D006817 ORTHO05D008603 6.9e-162 574.7 508 63.4
Cfa001223 Carpinus fangiana HOM05D006817 ORTHO05D008603 1.2e-161 573.9 445 71.9
FAN03G2834 Fragaria x ananassa HOM05D006817 ORTHO05D008603 8.5e-160 567.8 554 59.2
Zm00001eb406320 Zea mays HOM05D006817 ORTHO05D008603 3.9e-157 558.9 497 61.4
QL08p064576 Quercus lobata HOM05D006817 ORTHO05D008603 1.1e-156 557.4 462 67.7
PSO017G6024 Papaver somniferum HOM05D006817 ORTHO05D008603 1.5e-156 557.0 464 65.5
HPP92_019064 Vanilla planifolia HOM05D006817 ORTHO05D008603 1.5e-156 557.0 496 62.1
Os12g0112300 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 6.3e-155 551.6 496 62.9
Haze_17339 Corylus avellana HOM05D006817 ORTHO05D008603 3.1e-154 549.3 481 66.1
FAN01G1353 Fragaria x ananassa HOM05D006817 ORTHO05D008603 2.6e-153 546.2 457 66.1
HanXRQChr08g0222561 Helianthus annuus HOM05D006817 ORTHO05D008603 5.5e-151 538.5 515 58.4
FAN10G2384 Fragaria x ananassa HOM05D006817 ORTHO05D008603 2.1e-150 536.6 455 65.9
AUR62003430 Chenopodium quinoa HOM05D006817 ORTHO05D008603 1.4e-146 523.9 519 58.6
CiPaw.02G198400 Carya illinoinensis HOM05D006817 ORTHO05D008603 7.0e-146 521.5 416 69.5
Lj8A57G58 Lonicera japonica HOM05D006817 ORTHO05D008603 3.5e-145 519.2 411 69.6
CANSAT56G1261 Cannabis sativa HOM05D006817 ORTHO05D008603 7.2e-143 511.5 485 62.1
SGA_v2.0_scaffold44G16643 Striga asiatica HOM05D006817 ORTHO05D008603 1.6e-142 510.4 497 59.4
FvH4_7g25670 Fragaria vesca HOM05D006817 ORTHO05D008603 4.0e-141 505.8 438 63.9
Aa31LG11G6330 Aethionema arabicum HOM05D006817 ORTHO05D008603 1.5e-140 503.8 489 60.5
AUR62012358 Chenopodium quinoa HOM05D006817 ORTHO05D008603 2.0e-140 503.4 476 61.6
Sabra19G0058300 Salix brachista HOM05D000055 ORTHO05D000057 8.5e-136 488.0 472 59.5
CARHR207930 Cardamine hirsuta HOM05D006817 ORTHO05D008603 1.2e-126 457.6 375 67.5
MD07G1231900 Malus domestica HOM05D006817 ORTHO05D008603 2.6e-124 449.9 366 69.7
AT5G05310 Arabidopsis thaliana HOM05D006817 ORTHO05D008603 5.2e-117 425.6 338 67.5
AUR62031486 Chenopodium quinoa HOM05D006817 ORTHO05D008603 4.3e-103 379.4 501 49.7
Pp3c22_2490 Physcomitrium patens HOM05D006817 ORTHO05D008603 6.8e-101 372.1 510 46.1
Ca_12776_v3 Cicer arietinum L. HOM05D006817 ORTHO05D008603 4.3e-95 352.8 326 61.7
unitig_46.g18743 Utricularia gibba HOM05D006817 ORTHO05D008603 1.2e-89 334.7 375 50.9
Carub.0006s0424 Capsella rubella HOM05D006817 ORTHO05D008603 2.3e-88 330.5 288 64.6
RcHm_v2.0_Chr1g0371891 Rosa chinensis HOM05D006817 ORTHO05D008603 3.9e-88 329.7 257 69.3
VMungo0647G0362 Vigna mungo HOM05D006817 ORTHO05D008603 1.9e-79 300.8 256 66.0
MD05G1328700 Malus domestica HOM05D006817 ORTHO05D008603 1.1e-71 275.0 243 65.8
Nitab4.5_0000109g0530 Nicotiana tabacum HOM05D006817 ORTHO05D008603 4.0e-69 266.5 239 63.2
RcHm_v2.0_Chr1g0371881 Rosa chinensis HOM05D006817 ORTHO05D008603 1.9e-66 257.7 171 77.2
SEGI_05100 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 6.7e-64 249.2 216 57.9
VMungo0647G0650 Vigna mungo HOM05D006817 ORTHO05D008603 1.3e-59 235.0 212 62.3
MSTRG.24128 Avicennia marina HOM05D006817 ORTHO05D008603 6.3e-54 216.1 154 70.1
MD07G1231800 Malus domestica HOM05D006817 ORTHO05D008603 1.2e-52 211.8 160 70.6
QL10p038395 Quercus lobata HOM05D006817 ORTHO05D008603 5.5e-50 203.0 168 64.3
Oeu020109.1 Olea europaea HOM05D006817 ORTHO05D008603 4.2e-42 176.8 158 58.9
QL05p063879 Quercus lobata HOM05D006817 ORTHO05D008603 2.8e-38 164.1 141 65.2
SEGI_41528 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 5.9e-36 156.4 167 53.9
Cre08.g361000 Chlamydomonas reinhardtii HOM05D006817 ORTHO05D008603 1.6e-33 148.3 489 28.6
FvH4_7g25690 Fragaria vesca HOM05D006817 ORTHO05D008603 4.1e-29 133.7 90 75.6
QL03p030054 Quercus lobata HOM05D006817 ORTHO05D008603 2.7e-28 131.0 98 76.5
QL06p040335 Quercus lobata HOM05D006817 ORTHO05D008603 1.3e-27 128.6 96 77.1
QL09p047975 Quercus lobata HOM05D000176 ORTHO05D000106 6.1e-25 119.8 96 72.9
FAN06G4794 Fragaria x ananassa HOM05D006817 ORTHO05D008603 4.0e-24 117.1 76 76.3
Hund15836 Selenicereus undatus HOM05D006817 ORTHO05D008603 2.0e-23 114.8 72 79.2
Os11g0112900 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 2.4e-21 107.8 99 60.6
QL08p064573 Quercus lobata HOM05D006817 ORTHO05D008603 1.0e-19 102.4 64 76.6
QL10p065865 Quercus lobata HOM05D006817 ORTHO05D008603 3.6e-17 94.0 77 70.1
FAN06G1140 Fragaria x ananassa HOM05D006817 ORTHO05D008603 3.4e-15 87.4 59 76.3
MD17G1183400 Malus domestica HOM05D006817 ORTHO05D008603 9.8e-15 85.9 57 78.9
Prupe.2G262300 Prunus persica HOM05D006817 ORTHO05D008603 1.5e-07 62.0 90 46.7
PGSC0003DMG400024308 Solanum tuberosum HOM05D006817 ORTHO05D008603 1.5e-07 62.0 42 69.0


User provided reference genes

Program Settings