Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 2.6e-89 332.0 170 100.0
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 4.4e-84 314.7 170 95.3
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 7.7e-81 303.9 170 92.9
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 2.2e-75 285.8 170 87.1
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 3.5e-57 225.3 172 70.9
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 3.5e-57 225.3 172 69.2
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 1.7e-56 223.0 169 68.6
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 2.9e-56 222.2 168 67.3
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 6.6e-56 221.1 168 67.3
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 2.5e-55 219.2 168 67.3
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 3.3e-55 218.8 169 66.3
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 9.5e-55 217.2 169 66.3
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 6.1e-54 214.5 170 67.1
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 8.0e-54 214.2 170 67.1
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 1.8e-53 213.0 173 65.9
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 2.3e-53 212.6 171 65.5
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 8.9e-53 210.7 182 63.2
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 8.9e-53 210.7 166 68.7
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 1.2e-52 210.3 176 61.9
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 5.7e-52 208.0 168 64.3
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 1.3e-51 206.8 176 60.8
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 1.3e-51 206.8 172 63.4
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.3e-51 206.8 180 63.3
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 3.7e-51 205.3 169 64.5
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 6.4e-51 204.5 170 63.5
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 1.1e-50 203.8 169 66.9
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 2.4e-50 202.6 171 63.7
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 1.2e-49 200.3 168 61.3
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 3.5e-49 198.7 169 65.1
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 7.8e-49 197.6 168 66.1
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.0e-48 197.2 166 62.7
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 3.0e-48 195.7 173 61.3
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 3.9e-48 195.3 173 61.3
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 6.6e-48 194.5 158 65.2
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 1.5e-47 193.4 172 59.3
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 1.9e-47 193.0 178 60.1
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.5e-47 192.6 173 60.1
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 2.5e-47 192.6 175 59.4
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 7.3e-47 191.0 169 59.8
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 7.3e-47 191.0 169 59.8
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.2e-46 190.3 169 60.4
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 4.7e-46 188.3 169 59.8
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 1.8e-45 186.4 179 56.4
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.3e-45 186.0 178 59.6
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 2.3e-45 186.0 167 57.5
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 3.1e-45 185.7 185 56.2
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 8.9e-45 184.1 170 58.2
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.2e-44 183.7 167 57.5
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 1.5e-44 183.3 169 56.8
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.0e-44 183.0 171 57.3
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 5.8e-44 181.4 171 56.1
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 7.5e-44 181.0 169 55.0
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 7.5e-44 181.0 169 55.0
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 7.5e-44 181.0 170 60.0
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 9.8e-44 180.6 173 56.6
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 9.8e-44 180.6 165 60.0
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 1.3e-43 180.3 168 56.5
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 1.7e-43 179.9 169 54.4
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 1.7e-43 179.9 173 57.2
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 2.2e-43 179.5 177 56.5
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 2.9e-43 179.1 169 55.6
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 3.7e-43 178.7 171 56.1
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 3.7e-43 178.7 171 55.6
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 6.4e-43 177.9 124 70.2
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 1.9e-42 176.4 170 56.5
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 4.1e-42 175.3 112 79.5
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 4.1e-42 175.3 170 57.6
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 5.4e-42 174.9 170 54.7
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 5.4e-42 174.9 170 54.1
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 9.2e-42 174.1 178 53.9
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 9.2e-42 174.1 178 53.9
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 3.5e-41 172.2 178 53.4
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 3.5e-41 172.2 170 55.3
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 4.6e-41 171.8 163 54.6
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 6.0e-41 171.4 170 54.7
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 7.8e-41 171.0 170 52.9
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.7e-40 169.9 170 51.8
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 3.0e-40 169.1 106 78.3
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 6.6e-40 167.9 170 52.9
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 6.6e-40 167.9 169 53.8
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 8.6e-40 167.5 175 53.1
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 8.6e-40 167.5 240 44.2
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 1.1e-39 167.2 158 57.0
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 9.5e-39 164.1 169 56.2
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 1.2e-38 163.7 170 54.1
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.2e-38 163.7 132 64.4
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 1.6e-38 163.3 168 54.8
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 2.1e-38 162.9 179 50.8
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 8.1e-38 161.0 169 52.7
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 1.1e-37 160.6 168 52.4
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.1e-37 160.6 165 53.3
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 4.0e-37 158.7 104 76.0
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 4.0e-37 158.7 141 59.6
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 5.2e-37 158.3 169 50.3
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 5.2e-37 158.3 167 53.9
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.5e-36 156.8 168 53.6
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 1.5e-36 156.8 170 51.8
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 2.6e-36 156.0 170 52.4
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 4.4e-36 155.2 186 51.6
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 5.8e-36 154.8 153 56.2
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 1.7e-35 153.3 168 54.2
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 4.9e-35 151.8 173 53.2
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 8.3e-35 151.0 169 47.9
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 8.3e-35 151.0 176 47.2
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 1.1e-34 150.6 179 49.2
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 3.2e-34 149.1 170 48.8
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 3.2e-34 149.1 160 52.5
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 5.4e-34 148.3 130 56.9
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 1.2e-33 147.1 154 53.2
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.3e-32 142.9 129 60.5
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 3.9e-32 142.1 173 48.6
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 5.1e-32 141.7 155 51.0
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 8.6e-32 141.0 130 56.9
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.5e-31 140.2 172 46.5
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 2.5e-31 139.4 119 58.8
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 3.3e-31 139.0 184 46.7
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 3.3e-31 139.0 188 46.3
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 9.5e-31 137.5 106 66.0
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 2.8e-30 136.0 165 49.1
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 4.4e-28 128.6 176 42.6
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 7.6e-28 127.9 170 46.5
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 1.9e-26 123.2 97 63.9
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 4.1e-26 122.1 132 53.0
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 4.1e-26 122.1 182 40.7
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 5.4e-26 121.7 106 58.5
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 8.6e-24 114.4 121 59.5
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 1.2e-22 110.5 106 51.9
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 6.2e-22 108.2 75 73.3
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.8e-21 106.7 106 50.0
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 1.4e-18 97.1 168 36.3
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 7.1e-18 94.7 107 51.4
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 1.3e-16 90.5 103 49.5
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 1.3e-16 90.5 103 49.5
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 6.6e-16 88.2 97 52.6
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 6.9e-13 78.2 111 37.8
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 5.4e-10 68.6 133 39.1
MCO11G196 Micromonas commoda HOM05D004876 ORTHO05D005488 3.5e-09 65.9 161 27.3
Actinidia31636 Actinidia chinensis HOM05D004876 ORTHO05D005488 1.1e-07 60.8 99 40.4
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.9e-07 60.1 62 46.8
Nitab4.5_0001671g0020 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.1e-06 56.6 64 48.4


User provided reference genes

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