Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 1.5e-133 479.6 243 100.0
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 8.0e-124 447.2 243 93.0
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 2.0e-106 389.4 235 81.7
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 3.5e-79 298.9 225 66.2
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 1.3e-76 290.4 228 61.4
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 1.6e-76 290.0 227 62.6
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 8.2e-76 287.7 206 68.9
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 9.0e-75 284.3 227 61.7
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 9.0e-75 284.3 235 61.7
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 1.2e-74 283.9 222 63.5
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 2.6e-74 282.7 239 59.4
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 3.4e-74 282.3 222 62.6
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 1.3e-73 280.4 211 65.4
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 2.2e-73 279.6 223 61.4
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 1.1e-72 277.3 225 61.3
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 1.4e-72 276.9 225 63.1
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 1.9e-72 276.6 222 61.3
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 7.1e-72 274.6 198 65.7
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 3.5e-71 272.3 222 61.3
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 7.9e-71 271.2 222 59.9
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 2.3e-70 269.6 224 57.6
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 5.1e-70 268.5 204 65.7
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 8.7e-70 267.7 247 53.4
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 4.3e-69 265.4 222 59.9
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 4.3e-69 265.4 226 59.7
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 7.4e-69 264.6 222 59.0
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 1.3e-68 263.8 222 59.9
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 1.6e-68 263.5 224 58.9
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 1.1e-67 260.8 220 60.5
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 1.8e-67 260.0 231 58.0
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 2.4e-67 259.6 238 55.9
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 6.9e-67 258.1 200 64.0
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 9.0e-67 257.7 239 53.6
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 9.0e-67 257.7 223 58.7
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 1.2e-66 257.3 224 58.5
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 2.0e-66 256.5 228 56.6
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 4.5e-66 255.4 231 57.6
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 5.9e-66 255.0 231 57.6
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 5.9e-66 255.0 235 55.3
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 7.7e-66 254.6 225 59.1
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 1.7e-65 253.4 207 63.3
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 2.2e-65 253.1 234 58.5
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 5.0e-65 251.9 224 58.0
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 6.5e-65 251.5 231 58.9
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 4.2e-64 248.8 229 55.5
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 5.5e-64 248.4 234 54.3
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 3.6e-63 245.7 236 53.4
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 1.4e-62 243.8 224 56.7
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 6.7e-62 241.5 171 66.1
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 1.3e-60 237.3 232 54.7
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 6.3e-60 235.0 211 56.9
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 1.4e-59 233.8 225 54.7
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 4.1e-59 232.3 183 63.4
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 6.9e-59 231.5 224 55.8
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 1.2e-58 230.7 199 59.3
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 2.0e-58 229.9 208 55.8
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 1.0e-57 227.6 225 52.4
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 6.1e-55 218.4 226 53.1
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 1.4e-54 217.2 203 49.8
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 1.8e-54 216.9 183 59.6
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.0e-53 213.4 236 48.3
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.0e-53 213.4 236 48.3
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.9e-49 199.5 258 43.8
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 1.5e-48 197.2 206 51.5
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 8.0e-47 191.4 153 58.8
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 1.4e-43 180.6 129 67.4
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 1.2e-42 177.6 144 65.3
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 2.9e-41 172.9 131 67.9
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 4.2e-40 169.1 163 53.4
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 1.2e-39 167.5 239 41.0
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 6.1e-39 165.2 235 40.4
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 8.0e-39 164.9 134 58.2
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 2.3e-38 163.3 168 53.0
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 3.0e-38 162.9 111 67.6
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 7.0e-35 151.8 119 62.2
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 7.0e-35 151.8 119 62.2
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 1.7e-33 147.1 227 41.9
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 2.5e-32 143.3 134 54.5
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 5.5e-32 142.1 126 54.0
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 7.2e-32 141.7 128 57.0
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.2e-31 141.0 113 62.8
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 2.3e-30 136.7 119 57.1
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 4.0e-30 136.0 113 59.3
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 8.8e-30 134.8 125 56.8
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 9.8e-29 131.3 134 52.2
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.3e-28 131.0 116 50.0
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 1.3e-28 131.0 106 62.3
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 4.8e-28 129.0 105 61.0
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 5.4e-27 125.6 119 53.8
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 2.0e-26 123.6 131 52.7
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.6e-23 112.8 96 60.4
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 1.3e-20 104.4 70 71.4
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 1.3e-20 104.4 221 29.0
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.8e-20 103.2 87 59.8
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 5.4e-19 99.0 63 71.4
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 4.5e-18 95.9 74 60.8
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 7.8e-18 95.1 100 46.0
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 1.7e-17 94.0 73 61.6
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 5.6e-16 89.0 184 29.3
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 3.1e-14 83.2 87 49.4
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 3.1e-14 83.2 77 54.5
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 5.2e-14 82.4 101 42.6
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 5.0e-09 65.9 81 45.7


User provided reference genes

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