Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 6.4e-50 201.1 156 100.0
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 3.1e-36 155.6 156 85.3
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 3.1e-36 155.6 156 85.3
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.1e-20 104.0 71 69.0
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 1.0e-18 97.4 71 66.2
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.0e-18 97.4 64 71.9
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 1.4e-17 93.6 68 61.8
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 1.4e-17 93.6 71 60.6
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 1.9e-17 93.2 70 65.7
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 1.9e-17 93.2 71 62.0
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 2.5e-17 92.8 71 63.4
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 3.2e-17 92.4 71 62.0
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 4.2e-17 92.0 67 62.7
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 4.2e-17 92.0 67 62.7
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 7.2e-17 91.3 71 62.0
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 9.4e-17 90.9 135 75.6
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 9.4e-17 90.9 71 62.0
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 9.4e-17 90.9 71 62.0
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 9.4e-17 90.9 71 62.0
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 1.2e-16 90.5 71 60.6
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 1.6e-16 90.1 71 62.0
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 1.6e-16 90.1 71 60.6
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 2.1e-16 89.7 71 56.3
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 3.6e-16 89.0 69 60.9
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 3.6e-16 89.0 68 58.8
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 3.6e-16 89.0 68 58.8
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 1.0e-15 87.4 68 60.3
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 1.0e-15 87.4 68 60.3
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 1.0e-15 87.4 68 60.3
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 1.4e-15 87.0 68 61.8
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 1.4e-15 87.0 68 61.8
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 1.4e-15 87.0 71 59.2
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 1.4e-15 87.0 71 59.2
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 1.4e-15 87.0 68 61.8
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 2.3e-15 86.3 71 56.3
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 2.3e-15 86.3 69 55.1
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 3.0e-15 85.9 70 57.1
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 3.9e-15 85.5 61 59.0
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 3.9e-15 85.5 61 59.0
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 3.9e-15 85.5 68 63.2
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 3.9e-15 85.5 71 59.2
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 3.9e-15 85.5 138 70.3
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 3.9e-15 85.5 138 69.6
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 5.2e-15 85.1 67 61.2
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 5.2e-15 85.1 71 54.9
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 5.2e-15 85.1 67 55.2
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 6.7e-15 84.7 68 60.3
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 6.7e-15 84.7 67 61.2
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 1.1e-14 84.0 69 55.1
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 2.6e-14 82.8 61 55.7
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 2.6e-14 82.8 69 56.5
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 2.6e-14 82.8 66 63.6
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 3.3e-14 82.4 138 64.5
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 3.3e-14 82.4 52 75.0
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 4.4e-14 82.0 71 57.7
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 4.4e-14 82.0 135 68.9
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 4.4e-14 82.0 71 53.5
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 9.7e-14 80.9 67 53.7
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 1.3e-13 80.5 71 52.1
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 2.8e-13 79.3 66 59.1
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 4.8e-13 78.6 69 52.2
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 8.2e-13 77.8 66 59.1
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 8.2e-13 77.8 51 72.5
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 1.4e-12 77.0 66 57.6
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 4.1e-12 75.5 54 61.1
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 1.2e-11 73.9 49 69.4
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 1.2e-11 73.9 48 75.0
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 1.2e-11 73.9 49 69.4
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 2.6e-11 72.8 55 58.2
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 3.5e-11 72.4 48 70.8
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 3.5e-11 72.4 52 63.5
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 4.5e-11 72.0 52 59.6
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 7.7e-11 71.2 48 70.8
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 1.7e-10 70.1 49 67.3
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 5.0e-10 68.6 51 66.7
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 8.5e-10 67.8 45 68.9
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 8.5e-10 67.8 48 66.7
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 1.1e-09 67.4 47 57.4
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 1.5e-09 67.0 49 65.3
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 1.9e-09 66.6 49 63.3
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.9e-09 66.6 47 70.2
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 2.5e-09 66.2 47 70.2
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 2.5e-09 66.2 47 70.2
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 2.5e-09 66.2 47 70.2
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 2.5e-09 66.2 47 70.2
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 2.5e-09 66.2 47 70.2
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 2.5e-09 66.2 50 62.0
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 5.5e-09 65.1 49 61.2
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 5.5e-09 65.1 44 70.5
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 5.5e-09 65.1 44 70.5
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 5.5e-09 65.1 47 61.7
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 5.5e-09 65.1 49 61.2
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 7.2e-09 64.7 48 66.7
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 7.2e-09 64.7 46 63.0
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 7.2e-09 64.7 50 58.0
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 1.2e-08 63.9 48 62.5
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 2.1e-08 63.2 46 67.4
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 2.1e-08 63.2 46 67.4
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 2.1e-08 63.2 47 68.1
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 2.7e-08 62.8 44 70.5
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 3.6e-08 62.4 47 66.0
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 3.6e-08 62.4 48 62.5
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 3.6e-08 62.4 46 65.2
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 8.0e-08 61.2 45 68.9
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 8.0e-08 61.2 45 57.8
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 1.0e-07 60.8 48 58.3
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 1.0e-07 60.8 50 56.0
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 1.4e-07 60.5 45 60.0
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 1.8e-07 60.1 44 63.6
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 1.8e-07 60.1 48 58.3
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 2.3e-07 59.7 46 63.0
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 2.3e-07 59.7 46 58.7
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 3.0e-07 59.3 46 58.7
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 3.0e-07 59.3 50 56.0
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 6.7e-07 58.2 55 60.0
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 6.7e-07 58.2 50 52.0
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 8.8e-07 57.8 40 62.5
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 2.6e-06 56.2 40 62.5
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 4.4e-06 55.5 37 62.2
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 5.7e-06 55.1 37 59.5
SEGI_27242 Sequoiadendron giganteum HOM05D002986 ORTHO05D007611 9.7e-06 54.3 47 51.1


User provided reference genes

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