Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 6.8e-117 424.1 226 100.0
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 6.6e-104 380.9 226 88.5
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 9.6e-79 297.4 232 68.5
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 4.4e-76 288.5 212 73.1
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 1.2e-44 184.1 240 48.8
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 1.7e-43 180.3 240 48.3
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 1.4e-42 177.2 238 45.0
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 7.2e-42 174.9 179 51.4
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 3.6e-41 172.6 259 41.3
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 1.4e-40 170.6 246 43.9
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 1.8e-40 170.2 176 52.8
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 1.8e-40 170.2 234 43.6
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.8e-40 170.2 239 43.5
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 3.9e-40 169.1 252 40.5
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 3.9e-40 169.1 248 43.5
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 5.1e-40 168.7 247 43.3
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 8.8e-40 167.9 241 42.3
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 4.3e-39 165.6 247 40.1
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 9.7e-39 164.5 250 42.0
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 9.7e-39 164.5 242 43.4
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.8e-38 162.9 246 43.1
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 3.7e-38 162.5 240 40.8
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.1e-37 161.0 233 45.1
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 1.1e-37 161.0 240 41.7
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 1.4e-37 160.6 232 41.8
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 1.4e-37 160.6 208 44.2
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.4e-37 160.6 208 44.2
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.4e-37 160.6 164 51.2
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 1.8e-37 160.2 248 40.3
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 2.4e-37 159.8 257 41.2
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 2.4e-37 159.8 245 40.4
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 3.1e-37 159.5 243 42.4
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.3e-37 158.7 243 42.8
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 6.9e-37 158.3 153 60.8
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 6.9e-37 158.3 242 40.5
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 9.1e-37 157.9 251 41.8
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 1.2e-36 157.5 248 37.9
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.2e-36 157.5 179 48.6
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.0e-36 156.8 232 40.1
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 2.6e-36 156.4 185 46.5
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 3.4e-36 156.0 164 51.8
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 4.5e-36 155.6 172 51.2
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 4.5e-36 155.6 165 47.9
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 7.7e-36 154.8 243 41.6
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 7.7e-36 154.8 237 43.5
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.0e-35 154.5 244 40.2
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 1.3e-35 154.1 171 49.7
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 1.3e-35 154.1 188 45.7
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.7e-35 153.7 168 47.0
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 2.2e-35 153.3 196 44.4
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 2.9e-35 152.9 224 41.5
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 2.9e-35 152.9 158 50.0
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 3.8e-35 152.5 228 42.5
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 3.8e-35 152.5 228 42.5
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 3.8e-35 152.5 224 41.5
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 3.8e-35 152.5 246 39.0
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 5.0e-35 152.1 171 48.5
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 5.0e-35 152.1 171 48.5
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 5.0e-35 152.1 247 40.1
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 5.0e-35 152.1 247 40.1
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 8.5e-35 151.4 229 41.0
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 8.5e-35 151.4 229 41.0
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 1.1e-34 151.0 216 40.3
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 1.4e-34 150.6 233 41.6
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 1.9e-34 150.2 236 41.5
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 2.5e-34 149.8 234 41.9
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 2.5e-34 149.8 165 46.1
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 3.2e-34 149.4 176 48.9
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 4.2e-34 149.1 160 50.0
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 7.2e-34 148.3 177 45.8
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.2e-34 148.3 159 47.8
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 9.4e-34 147.9 156 48.7
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 9.4e-34 147.9 159 47.8
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 1.2e-33 147.5 173 46.2
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.2e-33 147.5 230 40.0
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.2e-33 147.5 206 43.7
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.6e-33 147.1 194 42.3
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 2.1e-33 146.7 249 41.0
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.0e-32 144.4 224 38.8
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.0e-32 144.4 228 41.7
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 2.3e-32 143.3 170 44.1
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 2.3e-32 143.3 170 46.5
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 3.0e-32 142.9 177 45.8
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 3.0e-32 142.9 177 45.2
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 3.0e-32 142.9 177 45.2
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 3.0e-32 142.9 177 45.8
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 3.0e-32 142.9 159 46.5
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 3.0e-32 142.9 200 42.0
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 3.0e-32 142.9 170 45.3
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.0e-31 140.2 166 46.4
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 2.6e-31 139.8 243 39.9
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 2.6e-31 139.8 159 44.7
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 2.6e-31 139.8 176 42.6
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 4.4e-31 139.0 193 41.5
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 5.7e-31 138.7 169 45.6
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 9.7e-31 137.9 203 39.4
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.7e-30 137.1 161 44.1
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.7e-30 137.1 173 39.3
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.2e-30 136.7 225 37.8
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 3.7e-30 136.0 167 45.5
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 8.2e-30 134.8 188 39.4
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.1e-29 134.4 230 37.8
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.0e-29 131.7 254 33.9
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 9.1e-29 131.3 180 41.7
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.0e-28 130.2 246 36.2
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.0e-28 130.2 254 35.4
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 3.5e-28 129.4 245 36.7
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 7.7e-28 128.3 148 47.3
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 7.7e-28 128.3 175 41.7
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 7.7e-28 128.3 173 41.6
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 6.5e-27 125.2 171 40.4
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.5e-26 124.0 142 46.5
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 3.2e-26 122.9 214 40.2
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 4.2e-26 122.5 232 36.2
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 4.7e-25 119.0 191 40.3
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 8.0e-25 118.2 198 38.4
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 2.3e-24 116.7 266 30.8
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 2.0e-23 113.6 179 38.0
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 3.3e-23 112.8 184 38.6
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 3.3e-23 112.8 193 36.3
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 5.7e-23 112.1 182 39.0
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 9.7e-23 111.3 158 38.6
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.4e-21 106.7 169 37.3
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 3.1e-21 106.3 162 37.0
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 3.1e-21 106.3 172 36.6
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 4.1e-21 105.9 190 35.3
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 9.1e-21 104.8 159 40.9
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 9.1e-21 104.8 162 36.4
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 1.2e-20 104.4 196 37.2
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.6e-20 104.0 188 30.9
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.6e-20 104.0 188 30.9
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 1.6e-20 104.0 182 36.8
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 2.7e-20 103.2 180 46.7
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 2.7e-20 103.2 180 38.3
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 3.5e-20 102.8 172 36.0
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 4.5e-20 102.4 173 37.0
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.9e-19 99.8 197 34.0
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.9e-19 99.8 138 39.9
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 6.5e-19 98.6 178 34.3
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 1.1e-18 97.8 159 32.1
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 2.5e-18 96.7 161 31.7
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.2e-17 94.4 136 40.4
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 3.6e-17 92.8 167 30.5
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 3.6e-17 92.8 181 34.8
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 2.3e-16 90.1 195 28.7
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 3.0e-16 89.7 166 30.1
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 5.2e-16 89.0 144 36.8
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 6.8e-16 88.6 178 33.1
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 8.8e-16 88.2 169 31.4
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 2.6e-15 86.7 201 28.9
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.4e-15 86.3 117 39.3
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 3.4e-15 86.3 178 32.6
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.7e-14 84.0 170 31.8
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 2.2e-14 83.6 158 31.0
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 5.4e-13 79.0 163 29.4
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 9.1e-13 78.2 185 27.6
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 2.0e-12 77.0 67 56.7
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.1e-10 71.2 93 37.6
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 3.2e-10 69.7 263 25.5
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 5.5e-10 68.9 88 39.8
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 6.1e-09 65.5 95 35.8
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.2e-07 61.2 153 28.8
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 2.6e-07 60.1 80 42.5
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 2.6e-07 60.1 71 45.1
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 5.7e-07 58.9 92 37.0


User provided reference genes

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