Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 1.5e-233 812.4 388 100.0
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 8.1e-227 790.0 388 97.2
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 1.2e-219 766.1 388 94.1
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 1.9e-204 715.7 388 86.3
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 9.1e-170 600.5 390 72.6
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 1.2e-169 600.1 390 72.1
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 1.9e-167 592.8 389 71.5
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 9.4e-167 590.5 391 71.1
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 9.4e-167 590.5 390 69.7
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 2.1e-166 589.3 389 71.5
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 2.7e-166 589.0 390 70.3
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 3.6e-166 588.6 389 69.4
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 8.0e-166 587.4 380 71.8
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 8.0e-166 587.4 392 68.4
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 2.3e-165 585.9 389 71.2
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 2.3e-165 585.9 389 71.2
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 5.2e-165 584.7 389 68.4
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 6.7e-165 584.3 390 69.5
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 1.1e-164 583.6 382 69.9
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 1.5e-164 583.2 384 69.8
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 7.4e-164 580.9 386 69.7
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 9.7e-164 580.5 389 71.0
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 1.3e-163 580.1 390 69.0
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 1.3e-163 580.1 390 69.0
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 1.3e-163 580.1 389 67.9
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 3.7e-163 578.6 388 70.9
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 4.8e-163 578.2 390 68.7
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 4.8e-163 578.2 387 71.1
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.4e-162 576.6 392 69.4
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 5.3e-162 574.7 378 70.6
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 5.3e-162 574.7 390 67.7
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 2.0e-161 572.8 390 69.7
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 3.5e-161 572.0 391 70.8
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 4.5e-161 571.6 441 62.6
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 4.5e-161 571.6 404 67.3
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 7.7e-161 570.9 379 70.7
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 5.0e-160 568.2 380 69.2
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 6.5e-160 567.8 388 70.1
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 1.5e-159 566.6 381 69.8
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 9.4e-159 563.9 407 66.6
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 1.2e-158 563.5 395 66.1
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 1.6e-158 563.1 387 69.5
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 4.7e-158 561.6 381 69.6
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.8e-157 559.7 388 68.0
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 2.0e-156 556.2 371 70.9
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 2.6e-156 555.8 381 68.8
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 2.6e-156 555.8 380 68.9
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 5.7e-156 554.7 387 68.2
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 7.5e-156 554.3 387 68.0
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 1.3e-155 553.5 379 69.4
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.3e-155 553.5 390 66.9
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 1.7e-155 553.1 388 67.8
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 2.2e-155 552.7 391 66.0
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 6.3e-155 551.2 389 68.6
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 8.2e-155 550.8 403 66.5
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 8.2e-155 550.8 389 68.4
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 1.4e-154 550.1 350 72.9
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.6e-153 546.6 388 67.5
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 1.6e-153 546.6 384 67.7
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 7.7e-153 544.3 390 65.9
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 1.0e-152 543.9 331 75.8
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 1.3e-152 543.5 369 68.6
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 2.2e-152 542.7 393 65.9
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 5.0e-152 541.6 384 67.4
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 2.7e-150 535.8 400 66.2
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 3.6e-150 535.4 391 65.2
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 1.0e-149 533.9 391 64.7
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 2.3e-149 532.7 382 64.1
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 3.0e-149 532.3 380 65.5
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 8.8e-149 530.8 393 63.1
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 2.0e-148 529.6 389 63.5
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 1.4e-146 523.5 393 63.9
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 4.1e-146 521.9 389 65.0
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 1.2e-145 520.4 385 64.2
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 5.9e-145 518.1 338 70.4
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.0e-144 517.3 391 64.2
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 8.6e-144 514.2 429 58.7
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 1.9e-143 513.1 309 76.4
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 8.0e-142 507.7 375 64.3
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 8.0e-142 507.7 402 63.4
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 1.4e-141 506.9 375 64.3
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 4.1e-138 495.4 421 57.0
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.9e-135 486.5 390 60.0
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 2.3e-133 479.6 299 74.2
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 5.2e-133 478.4 291 73.9
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 1.2e-132 477.2 381 60.9
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.9e-131 472.6 391 60.9
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.1e-130 470.7 337 65.3
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 4.6e-129 465.3 327 67.3
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 1.6e-126 456.8 386 58.8
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 2.0e-124 449.9 300 72.0
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 2.2e-123 446.4 336 63.7
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 4.3e-119 432.2 243 80.7
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 5.6e-119 431.8 379 55.4
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 2.1e-118 429.9 429 55.0
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 1.0e-112 411.0 322 59.3
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 1.3e-112 410.6 319 58.6
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 3.8e-107 392.5 295 64.1
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 5.4e-106 388.7 293 59.4
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 7.8e-105 384.8 255 72.9
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 3.1e-101 372.9 337 57.9
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 8.1e-94 348.2 325 54.5
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 2.4e-93 346.7 245 66.1
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 2.4e-93 346.7 245 66.1
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 1.1e-87 327.8 300 55.7
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 4.5e-84 315.8 179 78.2
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.1e-79 301.2 327 48.3
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 3.3e-79 299.7 307 47.9
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 4.5e-68 262.7 141 85.1
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 4.5e-68 262.7 141 85.1
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 5.0e-67 259.2 237 55.7
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 5.5e-66 255.8 141 84.4
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 5.5e-66 255.8 230 55.7
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 1.0e-64 251.5 141 83.0
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 1.1e-63 248.1 342 38.0
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 1.1e-61 241.5 383 35.8
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 5.0e-43 179.5 108 75.0
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 2.1e-41 174.1 90 84.4
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.7e-38 164.5 98 71.4
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 4.8e-38 162.9 317 35.0
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 9.1e-37 158.7 90 77.8
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.3e-35 154.8 125 60.8
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 2.0e-31 141.0 88 72.7
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 9.1e-29 132.1 91 70.3
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.1e-26 125.2 291 30.6
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 3.0e-24 117.1 141 44.0
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 1.0e-19 102.1 55 76.4
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.1e-13 82.0 106 39.6
Prupe.8G040900 Prunus persica HOM05D005921 ORTHO05D007374 1.0e-11 75.5 97 46.4
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 1.0e-11 75.5 98 43.9


User provided reference genes

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