Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019969.2 Cucumis melo HOM05D006901 ORTHO05D008582 1.6e-80 302.8 162 100.0
CsaV3_6G004930 Cucumis sativus L. HOM05D006901 ORTHO05D008582 1.1e-71 273.5 162 91.4
ClCG08G007260 Citrullus lanatus HOM05D006901 ORTHO05D008582 3.9e-58 228.4 169 76.9
Sed0007149 Sechium edule HOM05D006901 ORTHO05D008582 5.7e-49 198.0 171 70.2
CiPaw.16G007900 Carya illinoinensis HOM05D006901 ORTHO05D008582 3.7e-32 142.1 167 56.9
CANSAT25G0969 Cannabis sativa HOM05D006901 ORTHO05D008582 1.8e-31 139.8 160 58.1
Duzib116G0108 Durio zibethinus HOM05D006901 ORTHO05D008582 4.1e-31 138.7 178 53.4
TAR376G0851 Trochodendron aralioides HOM05D006901 ORTHO05D008582 4.1e-31 138.7 119 68.9
Solyc04g072038.1 Solanum lycopersicum HOM05D006901 ORTHO05D008582 1.2e-30 137.1 120 68.3
Sopen04g028100 Solanum pennellii HOM05D006901 ORTHO05D008582 1.2e-30 137.1 120 68.3
MD10G1037700 Malus domestica HOM05D006901 ORTHO05D008582 1.6e-30 136.7 119 70.6
Haze_17820 Corylus avellana HOM05D006901 ORTHO05D008582 3.5e-30 135.6 118 66.9
Duzib041G0277 Durio zibethinus HOM05D006901 ORTHO05D008582 4.5e-30 135.2 178 52.2
MD05G1035400 Malus domestica HOM05D006901 ORTHO05D008582 4.5e-30 135.2 114 70.2
Prupe.8G043100 Prunus persica HOM05D006901 ORTHO05D008582 4.5e-30 135.2 119 66.4
Lalb_Chr21g0305611 Lupinus albus HOM05D006901 ORTHO05D008582 1.3e-29 133.7 116 66.4
Phvul.007G084500 Phaseolus vulgaris HOM05D006901 ORTHO05D008582 1.3e-29 133.7 124 65.3
PGSC0003DMG400025056 Solanum tuberosum HOM05D006901 ORTHO05D008582 1.3e-29 133.7 112 68.8
Thecc.08G162300 Theobroma cacao HOM05D006901 ORTHO05D008582 2.2e-29 132.9 173 52.0
Cc10_g06470 Coffea canephora HOM05D006901 ORTHO05D008582 2.9e-29 132.5 112 70.5
Gohir.D06G116100 Gossypium hirsutum HOM05D006901 ORTHO05D008582 2.9e-29 132.5 171 51.5
Gorai.010G133900 Gossypium raimondii HOM05D006901 ORTHO05D008582 2.9e-29 132.5 171 51.5
Rhsim06G0092600 Rhododendron simsii HOM05D006901 ORTHO05D008582 2.9e-29 132.5 165 53.3
Sc02g0003760 Simmondsia chinensis HOM05D006901 ORTHO05D008582 2.9e-29 132.5 173 54.3
arahy.Tifrunner.gnm1.ann1.96Y3Q8 Arachis hypogaea HOM05D006901 ORTHO05D008582 5.0e-29 131.7 106 71.7
arahy.Tifrunner.gnm1.ann1.YZ7MCJ Arachis hypogaea HOM05D006901 ORTHO05D008582 6.5e-29 131.3 106 70.8
Ciclev10002626m.g Citrus clementina HOM05D006901 ORTHO05D008582 6.5e-29 131.3 101 75.2
FvH4_2g12890 Fragaria vesca HOM05D006901 ORTHO05D008582 6.5e-29 131.3 142 57.7
FAN24G1802 Fragaria x ananassa HOM05D006901 ORTHO05D008582 6.5e-29 131.3 142 57.7
RcHm_v2.0_Chr6g0273991 Rosa chinensis HOM05D006901 ORTHO05D008582 6.5e-29 131.3 114 69.3
Actinidia15615 Actinidia chinensis HOM05D006901 ORTHO05D008582 1.1e-28 130.6 157 56.1
Aa31LG4G8920 Aethionema arabicum HOM05D006901 ORTHO05D008582 1.1e-28 130.6 100 75.0
SGA_v2.0_scaffold82G26198 Striga asiatica HOM05D006901 ORTHO05D008582 1.5e-28 130.2 83 84.3
FAN15G3138 Fragaria x ananassa HOM05D006901 ORTHO05D008582 2.5e-28 129.4 142 57.7
FAN20G0005 Fragaria x ananassa HOM05D006901 ORTHO05D008582 2.5e-28 129.4 142 57.7
FAN27G3188 Fragaria x ananassa HOM05D006901 ORTHO05D008582 3.2e-28 129.0 147 57.1
Gohir.A06G111900 Gossypium hirsutum HOM05D006901 ORTHO05D008582 3.2e-28 129.0 123 61.0
Manes.18G095700 Manihot esculenta HOM05D006901 ORTHO05D008582 3.2e-28 129.0 106 69.8
Nitab4.5_0003178g0070 Nicotiana tabacum HOM05D006901 ORTHO05D008582 3.2e-28 129.0 112 67.0
Nitab4.5_0003443g0040 Nicotiana tabacum HOM05D006901 ORTHO05D008582 3.2e-28 129.0 110 67.3
Psat6g189960 Pisum sativum HOM05D006901 ORTHO05D008582 3.2e-28 129.0 115 66.1
Potri.005G198100 Populus trichocarpa HOM05D006901 ORTHO05D008582 3.2e-28 129.0 116 64.7
CAN.G1183.19 Capsicum annuum HOM05D006901 ORTHO05D008582 5.5e-28 128.3 86 80.2
PGR042G3646 Punica granatum HOM05D006901 ORTHO05D008582 5.5e-28 128.3 101 73.3
VMungo0720G0575 Vigna mungo HOM05D006901 ORTHO05D008582 5.5e-28 128.3 100 74.0
Actinidia17766 Actinidia chinensis HOM05D006901 ORTHO05D008582 7.2e-28 127.9 156 51.3
PGR102G0180 Punica granatum HOM05D006901 ORTHO05D008582 7.2e-28 127.9 101 72.3
MSTRG.22112 Avicennia marina HOM05D006901 ORTHO05D008582 9.4e-28 127.5 166 51.2
TWI34G1320 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 9.4e-28 127.5 92 79.3
Ah.16g108540 Amaranthus hybridus HOM05D006901 ORTHO05D008582 1.2e-27 127.1 165 52.7
Glyma.10G220600 Glycine max HOM05D006901 ORTHO05D008582 1.6e-27 126.7 110 68.2
Potri.002G063100 Populus trichocarpa HOM05D006901 ORTHO05D008582 1.6e-27 126.7 113 65.5
Hma1.2p1_0678F.1_g202120 Hydrangea macrophylla HOM05D006901 ORTHO05D008582 2.1e-27 126.3 98 71.4
Oeu017620.1 Olea europaea HOM05D006901 ORTHO05D008582 2.1e-27 126.3 119 63.0
QL02p036605 Quercus lobata HOM05D006901 ORTHO05D008582 2.7e-27 125.9 160 53.8
Dinv02470 Davidia involucrata HOM05D006901 ORTHO05D008582 3.6e-27 125.6 164 51.8
Glyma.20G171000 Glycine max HOM05D006901 ORTHO05D008582 3.6e-27 125.6 115 64.3
Carub.0002s1849 Capsella rubella HOM05D006901 ORTHO05D008582 4.7e-27 125.2 144 55.6
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 4.7e-27 125.2 163 49.7
TPR.G792 Trifolium pratense HOM05D006901 ORTHO05D008582 4.7e-27 125.2 116 67.2
Cpa.g.sc26.114 Carica papaya HOM05D006901 ORTHO05D008582 6.1e-27 124.8 97 71.1
QL02p037117 Quercus lobata HOM05D006901 ORTHO05D008582 6.1e-27 124.8 160 53.1
SalBow7G3034 Salvia bowleyana HOM05D006901 ORTHO05D008582 6.1e-27 124.8 153 53.6
Duzib093G0981 Durio zibethinus HOM05D006901 ORTHO05D008582 8.0e-27 124.4 112 64.3
AT1G71730 Arabidopsis thaliana HOM05D006901 ORTHO05D008582 1.0e-26 124.0 115 60.9
Ca_10653_v3 Cicer arietinum L. HOM05D006901 ORTHO05D008582 1.0e-26 124.0 149 55.7
Atru.chr13.1989 Acer truncatum HOM05D006901 ORTHO05D008582 1.8e-26 123.2 121 62.8
Medtr1g097570 Medicago truncatula HOM05D006901 ORTHO05D008582 1.8e-26 123.2 151 54.3
CSS0011226 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.3e-26 122.9 119 63.0
CSS0025966 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.3e-26 122.9 119 63.0
Lsat_1_v5_gn_1_5120 Lactuca sativa HOM05D006901 ORTHO05D008582 2.3e-26 122.9 81 82.7
Sabra05G0150900 Salix brachista HOM05D006901 ORTHO05D008582 2.3e-26 122.9 113 61.9
SalBow8G2041 Salvia bowleyana HOM05D006901 ORTHO05D008582 2.3e-26 122.9 98 69.4
TWI60G0595 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 2.3e-26 122.9 128 59.4
Thhalv10019220m.g Eutrema salsugineum HOM05D006901 ORTHO05D008582 3.0e-26 122.5 95 71.6
Lj5g0019877 Lotus japonicus HOM05D006901 ORTHO05D008582 4.0e-26 122.1 111 66.7
Nn6g32189 Nelumbo nucifera HOM05D006901 ORTHO05D008582 4.0e-26 122.1 157 49.0
PSO675G2506 Papaver somniferum HOM05D006901 ORTHO05D008582 4.0e-26 122.1 92 71.7
Sp5g26760 Schrenkiella parvula HOM05D006901 ORTHO05D008582 5.2e-26 121.7 149 52.3
THA.LOC104810483 Tarenaya hassleriana HOM05D006901 ORTHO05D008582 6.7e-26 121.3 168 51.2
EL10Ac4g07716 Beta vulgaris HOM05D006901 ORTHO05D008582 8.8e-26 120.9 94 72.3
A07p37880 Brassica napus HOM05D006901 ORTHO05D008582 1.1e-25 120.6 112 61.6
BraA07t31353Z Brassica rapa HOM05D006901 ORTHO05D008582 1.1e-25 120.6 112 61.6
HPP92_002808 Vanilla planifolia HOM05D006901 ORTHO05D008582 1.1e-25 120.6 93 71.0
HPP92_002865 Vanilla planifolia HOM05D006901 ORTHO05D008582 1.1e-25 120.6 93 71.0
PSO541G2877 Papaver somniferum HOM05D006901 ORTHO05D008582 1.5e-25 120.2 92 70.7
EL10Ac1g01620 Beta vulgaris HOM05D006901 ORTHO05D008582 2.6e-25 119.4 94 71.3
HanXRQChr02g0041271 Helianthus annuus HOM05D006901 ORTHO05D008582 3.3e-25 119.0 81 80.2
ECA247G1717 Erigeron canadensis HOM05D006901 ORTHO05D008582 4.4e-25 118.6 113 63.7
Peaxi162Scf00360g00917 Petunia axillaris HOM05D006901 ORTHO05D008582 4.4e-25 118.6 118 59.3
ATR1120G022 Amborella trichopoda HOM05D006901 ORTHO05D008582 5.7e-25 118.2 86 73.3
EL10Ac1g01617 Beta vulgaris HOM05D006901 ORTHO05D008582 5.7e-25 118.2 126 61.1
Lj7E386T0 Lonicera japonica HOM05D006901 ORTHO05D008582 5.7e-25 118.2 86 77.9
AL2G31300 Arabidopsis lyrata HOM05D006901 ORTHO05D008582 9.7e-25 117.5 151 52.3
BcaC08g46599 Brassica carinata HOM05D006901 ORTHO05D008582 1.3e-24 117.1 112 60.7
C06p45780 Brassica napus HOM05D006901 ORTHO05D008582 1.3e-24 117.1 112 60.7
BolC6t39630H Brassica oleracea HOM05D006901 ORTHO05D008582 1.3e-24 117.1 112 60.7
Eucgr.F02679 Eucalyptus grandis HOM05D006901 ORTHO05D008582 1.3e-24 117.1 82 76.8
CARHR291060 Cardamine hirsuta HOM05D006901 ORTHO05D008582 3.7e-24 115.5 104 59.6
SEGI_14424 Sequoiadendron giganteum HOM05D006901 ORTHO05D008582 3.7e-24 115.5 103 67.0
unitig_32.g11111 Utricularia gibba HOM05D006901 ORTHO05D008582 6.3e-24 114.8 83 75.9
GSVIVG01013704001 Vitis vinifera HOM05D006901 ORTHO05D008582 8.2e-24 114.4 105 62.9
Nn5g28858 Nelumbo nucifera HOM05D006901 ORTHO05D008582 1.1e-23 114.0 116 59.5
Os05g0182000 Oryza sativa ssp. japonica HOM05D006901 ORTHO05D008582 2.2e-21 106.3 83 68.7
Lj5g0009364 Lotus japonicus HOM05D006901 ORTHO05D008582 1.5e-20 103.6 111 62.2
Pp3c17_20520 Physcomitrium patens HOM05D006901 ORTHO05D008582 3.2e-20 102.4 100 62.0
CSS0012150 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 4.2e-20 102.1 107 57.0
Zm00001eb346910 Zea mays HOM05D006901 ORTHO05D008582 9.4e-20 100.9 83 65.1
SMO351G0406 Selaginella moellendorffii HOM05D006901 ORTHO05D008582 2.7e-19 99.4 82 68.3
AagrBONN_evm.TU.Sc2ySwM_228.5132 Anthoceros agrestis HOM05D006901 ORTHO05D008582 3.6e-19 99.0 149 45.0
DCAR_001194 Daucus carota HOM05D006901 ORTHO05D008582 3.0e-18 95.9 64 81.2
CBR_g54341 Chara braunii HOM05D006901 ORTHO05D008582 1.2e-14 84.0 81 56.8
MCO05G280 Micromonas commoda HOM05D006901 ORTHO05D008582 4.5e-14 82.0 101 48.5
CSS0007119 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.5e-12 77.0 120 45.0
CSS0023453 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 9.5e-12 74.3 86 51.2
Cre03.g176500 Chlamydomonas reinhardtii HOM05D006901 ORTHO05D008582 1.0e-10 70.9 90 47.8
Ah.08g214420 Amaranthus hybridus HOM05D006901 ORTHO05D008582 6.8e-10 68.2 101 46.5


User provided reference genes

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