Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 3.2e-107 391.7 193 100.0
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 3.6e-103 378.3 193 95.9
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 9.3e-91 337.0 193 85.0
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 7.9e-74 280.8 191 69.6
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 1.0e-73 280.4 193 69.9
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 6.7e-73 277.7 174 73.0
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 1.1e-72 276.9 193 69.4
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.5e-72 276.6 192 68.2
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 9.7e-72 273.9 196 66.8
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 2.2e-71 272.7 196 67.3
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 8.2e-71 270.8 191 67.0
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 4.1e-70 268.5 198 65.7
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 4.1e-70 268.5 191 68.1
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 6.9e-70 267.7 193 65.8
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 9.1e-70 267.3 195 66.7
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 9.1e-70 267.3 191 67.5
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 1.5e-69 266.5 200 65.0
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 1.5e-69 266.5 187 67.4
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 2.6e-69 265.8 195 67.2
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 3.4e-69 265.4 185 66.5
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 4.5e-69 265.0 195 64.6
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 4.5e-69 265.0 193 65.8
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 5.9e-69 264.6 177 67.2
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 5.9e-69 264.6 177 70.1
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 1.0e-68 263.8 193 66.3
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 1.3e-68 263.5 188 66.0
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 2.2e-68 262.7 189 65.1
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 3.8e-68 261.9 185 67.0
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 5.0e-68 261.5 195 64.1
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 8.5e-68 260.8 185 67.0
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 8.5e-68 260.8 186 67.7
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 1.1e-67 260.4 196 64.8
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 1.4e-67 260.0 195 64.1
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 1.4e-67 260.0 188 67.0
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 1.4e-67 260.0 186 67.2
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 2.5e-67 259.2 192 63.5
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 2.5e-67 259.2 184 67.4
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 2.5e-67 259.2 193 63.7
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 3.2e-67 258.8 184 66.8
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 5.5e-67 258.1 188 64.4
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 5.5e-67 258.1 188 64.9
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 5.5e-67 258.1 195 66.7
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 5.5e-67 258.1 192 67.2
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 7.2e-67 257.7 188 64.9
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 7.2e-67 257.7 186 66.1
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 7.2e-67 257.7 195 63.6
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 7.2e-67 257.7 195 63.6
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 7.2e-67 257.7 186 66.7
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 9.4e-67 257.3 187 65.2
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 9.4e-67 257.3 189 67.2
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.6e-66 256.5 162 71.0
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 2.1e-66 256.1 188 64.4
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.1e-66 256.1 186 65.6
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 2.1e-66 256.1 171 70.2
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 3.6e-66 255.4 188 66.0
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 3.6e-66 255.4 176 69.3
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 6.1e-66 254.6 193 65.3
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 7.9e-66 254.2 193 63.2
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 7.9e-66 254.2 195 62.6
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 7.9e-66 254.2 195 62.6
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 7.9e-66 254.2 189 66.1
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 1.0e-65 253.8 187 65.8
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 1.8e-65 253.1 196 62.8
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 1.8e-65 253.1 187 65.2
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 2.3e-65 252.7 183 65.6
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 3.0e-65 252.3 195 62.6
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 6.7e-65 251.1 188 63.8
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 6.7e-65 251.1 195 63.6
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 6.7e-65 251.1 181 65.7
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 6.7e-65 251.1 190 63.7
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.1e-64 250.4 183 66.7
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 1.5e-64 250.0 194 65.5
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 2.0e-64 249.6 189 65.6
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 2.0e-64 249.6 170 68.8
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 3.3e-64 248.8 187 63.6
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 3.3e-64 248.8 154 74.0
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 5.7e-64 248.1 193 62.7
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 9.7e-64 247.3 191 63.4
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 8.2e-63 244.2 196 60.7
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 1.4e-62 243.4 187 59.4
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 1.4e-62 243.4 188 58.0
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 3.1e-62 242.3 181 62.4
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 5.3e-62 241.5 143 83.9
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 5.3e-62 241.5 198 61.6
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 9.1e-62 240.7 186 61.3
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 1.2e-61 240.4 189 63.0
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 1.2e-61 240.4 191 59.2
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 5.9e-61 238.0 184 61.4
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 1.3e-60 236.9 190 59.5
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 3.8e-60 235.3 200 57.0
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 5.0e-60 235.0 190 58.9
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 5.0e-60 235.0 190 60.5
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 1.1e-59 233.8 170 61.8
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 1.9e-59 233.0 194 56.7
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 1.9e-59 233.0 191 57.1
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 2.5e-59 232.6 175 64.6
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 2.5e-59 232.6 156 68.6
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 1.2e-58 230.3 206 54.9
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 1.2e-58 230.3 185 56.2
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 6.1e-58 228.0 188 58.5
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 1.0e-57 227.3 167 62.9
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 8.8e-57 224.2 207 54.6
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 9.7e-56 220.7 192 54.2
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 1.7e-55 219.9 185 56.2
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 7.7e-53 211.1 190 56.3
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 2.5e-51 206.1 169 56.8
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 1.4e-49 200.3 190 53.2
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 1.2e-48 197.2 156 58.3
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 1.2e-48 197.2 187 53.5
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 1.7e-47 193.4 182 52.2
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 1.4e-46 190.3 172 53.5
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 5.3e-46 188.3 132 65.9
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 1.2e-45 187.2 174 52.3
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 5.5e-43 178.3 176 52.8
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 5.2e-41 171.8 158 48.1
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 5.2e-41 171.8 158 48.1
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 5.7e-40 168.3 150 50.0
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 6.3e-39 164.9 96 79.2
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 6.3e-39 164.9 116 65.5
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 5.9e-37 158.3 127 61.4
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 8.6e-36 154.5 121 61.2
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 6.8e-33 144.8 120 60.8
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 2.0e-29 133.3 160 40.0
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 1.4e-22 110.5 93 54.8
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 1.6e-21 107.1 70 68.6
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 2.3e-20 103.2 71 66.2
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 3.9e-20 102.4 94 51.1
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 5.6e-19 98.6 74 58.1
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.1e-17 94.4 74 59.5
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 8.9e-17 91.3 144 31.9
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 2.0e-16 90.1 67 62.7
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 4.9e-15 85.5 70 62.9
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 4.9e-15 85.5 144 27.1
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 5.4e-14 82.0 73 57.5
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 9.2e-14 81.3 119 40.3
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 9.5e-11 71.2 143 24.5
Os11g0167400 Oryza sativa ssp. japonica HOM05D027232 ORTHO05D298405 7.1e-06 55.1 50 46.0


User provided reference genes

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