Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 3.0e-193 678.3 342 100.0
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 2.9e-188 661.8 342 96.8
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 2.4e-174 615.5 339 91.2
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 1.0e-161 573.5 351 82.1
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 2.0e-152 542.7 339 79.6
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 1.3e-111 407.1 324 62.7
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 9.6e-107 391.0 335 60.3
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 1.3e-106 390.6 296 63.9
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 2.1e-106 389.8 352 56.8
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 2.8e-106 389.4 335 59.4
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 3.1e-105 386.0 323 60.4
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 1.2e-104 384.0 327 59.3
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 7.6e-104 381.3 337 57.6
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 2.2e-103 379.8 329 59.9
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 1.4e-102 377.1 340 56.2
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 1.2e-101 374.0 324 59.3
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 1.0e-100 370.9 336 56.0
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 6.7e-100 368.2 342 57.9
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 5.7e-99 365.2 326 56.7
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 2.2e-98 363.2 324 59.0
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 3.7e-98 362.5 342 55.0
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 3.7e-98 362.5 346 56.4
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 6.3e-98 361.7 343 57.1
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 8.2e-98 361.3 323 59.1
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 3.1e-97 359.4 301 60.5
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 9.0e-97 357.8 297 60.6
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 9.0e-97 357.8 341 56.3
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 9.0e-97 357.8 336 56.2
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 9.0e-97 357.8 351 52.7
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 1.2e-96 357.5 324 56.5
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 1.2e-96 357.5 336 56.2
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 3.4e-96 355.9 297 60.3
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 4.5e-96 355.5 335 56.4
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 5.9e-96 355.1 324 56.5
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 7.6e-96 354.8 327 57.2
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 1.7e-95 353.6 344 52.6
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 2.9e-95 352.8 293 61.4
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 2.9e-95 352.8 323 55.7
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 3.8e-95 352.4 324 56.2
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 3.2e-94 349.4 319 56.1
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 4.2e-94 349.0 341 53.7
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 7.9e-93 344.7 329 55.6
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 1.4e-92 344.0 327 55.7
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 2.3e-92 343.2 335 55.2
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 3.0e-92 342.8 338 54.1
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 5.1e-92 342.0 342 51.8
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 1.1e-91 340.9 340 50.3
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 1.1e-91 340.9 341 51.0
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 1.9e-91 340.1 334 55.4
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 1.9e-91 340.1 325 55.7
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 4.3e-91 339.0 341 55.1
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 7.4e-91 338.2 343 52.2
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 1.3e-90 337.4 342 52.3
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 1.7e-90 337.0 346 50.0
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 3.7e-90 335.9 347 49.9
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 2.4e-89 333.2 342 52.9
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 2.4e-89 333.2 342 54.7
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 1.5e-88 330.5 337 49.6
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 1.5e-88 330.5 344 49.1
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 2.0e-88 330.1 340 48.8
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 5.9e-88 328.6 341 53.1
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 5.9e-88 328.6 259 62.5
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 1.3e-87 327.4 328 54.3
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 1.7e-87 327.0 342 52.3
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 2.2e-87 326.6 326 53.7
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 3.8e-87 325.9 326 50.0
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 8.5e-87 324.7 331 53.5
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 1.1e-86 324.3 326 50.9
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 1.4e-86 323.9 334 51.5
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 1.4e-86 323.9 271 59.8
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 1.9e-86 323.6 388 46.4
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 5.5e-86 322.0 328 54.0
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 5.5e-86 322.0 345 49.0
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 7.2e-86 321.6 330 50.0
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 1.2e-85 320.9 326 50.0
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 1.2e-85 320.9 295 51.5
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 7.9e-85 318.2 341 49.0
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 1.4e-84 317.4 356 52.5
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 6.7e-84 315.1 344 48.0
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 6.7e-84 315.1 319 53.9
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 2.6e-83 313.2 289 52.6
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 2.6e-83 313.2 359 49.3
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 3.3e-83 312.8 289 52.6
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 3.3e-83 312.8 289 52.2
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 3.3e-83 312.8 345 51.3
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 5.7e-83 312.0 353 46.2
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 1.3e-82 310.8 361 49.6
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 1.7e-82 310.5 308 52.6
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 1.1e-81 307.8 327 48.6
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 1.1e-81 307.8 365 47.9
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 1.8e-81 307.0 343 50.1
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 4.1e-81 305.8 339 49.0
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 1.2e-80 304.3 291 57.4
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 4.2e-78 295.8 347 49.9
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 4.7e-77 292.4 301 50.5
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 8.0e-77 291.6 334 48.5
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 8.8e-76 288.1 374 46.5
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 3.3e-75 286.2 343 50.1
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 4.2e-70 269.2 317 47.6
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 1.6e-61 240.7 218 52.8
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 2.6e-59 233.4 208 54.3
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 3.5e-56 223.0 193 56.0
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 6.6e-55 218.8 321 41.1
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 7.2e-54 215.3 178 60.7
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 1.0e-52 211.5 321 40.5
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 4.1e-49 199.5 330 38.5
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 3.3e-46 189.9 329 37.4
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 7.5e-43 178.7 245 40.4
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 3.7e-42 176.4 223 46.6
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 3.3e-38 163.3 214 39.7
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.7e-37 159.5 229 39.7
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.3e-36 157.1 207 42.0
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 5.2e-36 156.0 211 41.7
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.8e-36 155.6 207 41.1
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.6e-35 153.7 197 44.2
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 3.4e-35 153.3 195 44.1
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 1.3e-34 151.4 228 38.2
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.1e-32 144.1 223 36.3
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 7.8e-32 142.1 212 37.3
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.9e-25 120.9 153 41.2
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 1.2e-21 108.2 181 34.8
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 4.0e-20 103.2 108 53.7
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 9.2e-17 92.0 118 44.9
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 1.3e-15 88.2 108 50.9
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 1.7e-15 87.8 73 58.9
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 7.3e-14 82.4 108 39.8


User provided reference genes

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