Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 7.7e-52 206.8 102 100.0
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 2.5e-50 201.8 102 97.1
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 4.1e-45 184.5 102 88.2
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 7.7e-44 180.3 102 86.3
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 4.1e-37 157.9 100 74.0
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 2.7e-36 155.2 98 72.4
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 3.5e-36 154.8 99 75.8
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 5.9e-36 154.1 99 71.7
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 1.3e-35 152.9 102 70.6
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 1.3e-35 152.9 98 74.5
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 1.7e-35 152.5 101 70.3
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 1.7e-35 152.5 98 73.5
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 2.2e-35 152.1 102 69.6
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 2.2e-35 152.1 102 69.6
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 2.2e-35 152.1 102 69.6
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 2.2e-35 152.1 99 70.7
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 3.8e-35 151.4 102 69.6
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 6.5e-35 150.6 99 74.7
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 8.5e-35 150.2 99 70.7
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 1.1e-34 149.8 99 70.7
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 1.1e-34 149.8 99 72.7
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 1.5e-34 149.4 99 72.7
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 2.5e-34 148.7 100 69.0
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 2.5e-34 148.7 100 69.0
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 2.5e-34 148.7 99 71.7
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 2.5e-34 148.7 99 71.7
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 4.2e-34 147.9 102 67.6
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 4.2e-34 147.9 99 70.7
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 4.2e-34 147.9 99 70.7
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 4.2e-34 147.9 99 70.7
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 5.5e-34 147.5 98 70.4
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 5.5e-34 147.5 99 71.7
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 7.2e-34 147.1 99 68.7
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 9.4e-34 146.7 98 70.4
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 9.4e-34 146.7 98 70.4
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 1.6e-33 146.0 99 69.7
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 2.1e-33 145.6 97 72.2
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 3.6e-33 144.8 99 71.7
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 8.0e-33 143.7 98 69.4
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 1.0e-32 143.3 100 68.0
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 1.0e-32 143.3 99 68.7
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.4e-32 142.9 96 69.8
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.4e-32 142.9 96 69.8
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.4e-32 142.9 97 70.1
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 1.4e-32 142.9 97 70.1
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 1.4e-32 142.9 97 70.1
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 3.0e-32 141.7 100 67.0
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 3.0e-32 141.7 100 67.0
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 3.0e-32 141.7 100 67.0
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 3.0e-32 141.7 100 67.0
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 3.0e-32 141.7 100 67.0
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 3.0e-32 141.7 100 67.0
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 3.0e-32 141.7 100 67.0
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 3.0e-32 141.7 100 67.0
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 4.0e-32 141.4 100 66.0
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 5.2e-32 141.0 100 66.0
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 5.2e-32 141.0 97 69.1
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 6.8e-32 140.6 99 68.7
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 8.8e-32 140.2 100 66.0
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 8.8e-32 140.2 100 66.0
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 8.8e-32 140.2 100 66.0
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 1.2e-31 139.8 100 65.0
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 1.2e-31 139.8 99 66.7
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 1.5e-31 139.4 99 68.7
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 1.5e-31 139.4 99 68.7
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 1.5e-31 139.4 100 65.0
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 5.7e-31 137.5 100 64.0
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 5.7e-31 137.5 99 67.7
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 7.5e-31 137.1 99 66.7
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 7.5e-31 137.1 99 65.7
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 7.5e-31 137.1 99 65.7
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 7.5e-31 137.1 99 65.7
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 9.8e-31 136.7 99 67.7
FAN12G2091 Fragaria x ananassa HOM05D007099 ORTHO05D009081 1.3e-30 136.3 91 70.3
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 3.7e-30 134.8 101 61.4
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 3.7e-30 134.8 97 67.0
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 8.3e-30 133.7 101 62.4
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 1.8e-29 132.5 99 63.6
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 4.1e-29 131.3 86 72.1
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 7.0e-29 130.6 99 65.7
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 7.0e-29 130.6 99 65.7
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 4.5e-28 127.9 99 63.6
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 1.3e-27 126.3 87 67.8
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 1.7e-27 125.9 89 66.3
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 6.5e-27 124.0 81 70.4
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 1.5e-26 122.9 99 63.6
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 1.9e-26 122.5 88 65.9
ClCG01G010070 Citrullus lanatus HOM05D007099 ORTHO05D009081 4.2e-26 121.3 77 80.5
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 5.5e-26 120.9 99 56.6
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 5.5e-26 120.9 82 69.5
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 5.5e-26 120.9 82 69.5
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 1.4e-24 116.3 94 58.5
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 8.9e-24 113.6 87 59.8
Solyc00g500363.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.6e-20 102.8 69 66.7
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 1.0e-19 100.1 63 73.0
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 1.7e-19 99.4 75 62.7
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 2.3e-19 99.0 62 69.4
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 1.9e-18 95.9 68 64.7
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 5.6e-18 94.4 80 60.0
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 9.5e-18 93.6 63 69.8
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 9.5e-18 93.6 63 69.8
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 9.5e-18 93.6 99 50.5
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 2.8e-17 92.0 64 68.8
Cre17.g726300 Chlamydomonas reinhardtii HOM05D007099 ORTHO05D009081 3.0e-16 88.6 105 44.8
Rhsim10G0009600 Rhododendron simsii HOM05D000071 ORTHO05D000029 5.2e-16 87.8 56 73.2
Solyc09g050030.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 5.2e-16 87.8 63 63.5
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 1.5e-15 86.3 66 60.6
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.0e-15 85.9 59 64.4
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 6.4e-14 80.9 49 75.5
Pp3c2_23460 Physcomitrium patens HOM05D007099 ORTHO05D009081 2.7e-12 75.5 53 64.2
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 5.0e-11 71.2 53 58.5
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 5.6e-10 67.8 91 44.0
Peaxi162Scf44104g00001 Petunia axillaris HOM05D007099 ORTHO05D009081 9.5e-10 67.0 39 74.4
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 1.1e-08 63.5 70 50.0
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 1.4e-08 63.2 90 41.1
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 1.5e-07 59.7 91 40.7
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 1.5e-07 59.7 91 40.7
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 2.6e-07 58.9 91 42.9
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 2.6e-07 58.9 91 42.9
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 2.6e-07 58.9 91 42.9
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 2.6e-07 58.9 91 42.9
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 2.6e-07 58.9 91 41.8
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 3.4e-07 58.5 91 40.7
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 3.4e-07 58.5 91 40.7
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 3.4e-07 58.5 91 40.7
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 4.4e-07 58.2 91 39.6
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 4.4e-07 58.2 91 39.6
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 4.4e-07 58.2 91 39.6
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 4.4e-07 58.2 91 39.6
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 4.4e-07 58.2 91 39.6
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 4.4e-07 58.2 91 39.6
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 4.4e-07 58.2 91 39.6
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 4.4e-07 58.2 91 39.6
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 4.4e-07 58.2 91 39.6
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 4.4e-07 58.2 91 39.6
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 4.4e-07 58.2 91 42.9
Nitab4.5_0000033g0070 Nicotiana tabacum HOM05D007099 ORTHO05D009081 4.4e-07 58.2 49 53.1
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 4.4e-07 58.2 91 39.6
Hma1.2p1_0051F.1_g029490 Hydrangea macrophylla HOM05D000388 ORTHO05D009843 5.8e-07 57.8 91 41.8
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 7.5e-07 57.4 91 39.6
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 7.5e-07 57.4 89 41.6
LjContig00489g0027265 Lotus japonicus HOM05D000388 ORTHO05D009843 1.3e-06 56.6 97 40.2
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 1.3e-06 56.6 91 40.7
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 1.3e-06 56.6 91 39.6
Hund28396 Selenicereus undatus HOM05D000388 ORTHO05D009843 1.7e-06 56.2 64 48.4
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 2.2e-06 55.8 91 38.5
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 2.2e-06 55.8 91 38.5
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 2.9e-06 55.5 91 39.6
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.9e-06 55.5 91 38.5
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 2.9e-06 55.5 90 37.8
arahy.Tifrunner.gnm1.ann1.FC7Y3W Arachis hypogaea HOM05D000388 ORTHO05D009843 3.7e-06 55.1 75 42.7
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 3.7e-06 55.1 91 38.5
CAN.G386.18 Capsicum annuum HOM05D000388 ORTHO05D000473 3.7e-06 55.1 56 48.2
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 3.7e-06 55.1 91 38.5
arahy.Tifrunner.gnm1.ann1.6B1C4L Arachis hypogaea HOM05D000388 ORTHO05D009843 4.9e-06 54.7 88 38.6
Migut.D01348 Erythranthe guttata HOM05D000388 ORTHO05D009843 8.3e-06 53.9 91 38.5
Migut.J01359 Erythranthe guttata HOM05D000388 ORTHO05D009843 8.3e-06 53.9 91 38.5
Solyc00g500055.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 8.3e-06 53.9 89 39.3
Solyc00g500137.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 8.3e-06 53.9 89 39.3
Solyc00g500207.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 8.3e-06 53.9 89 39.3


User provided reference genes

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