Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 2.0e-218 762.3 432 100.0
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 6.5e-193 677.6 451 88.0
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 4.9e-156 555.1 458 67.9
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 1.4e-147 526.9 376 76.6
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 1.3e-100 370.9 465 52.9
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 6.5e-76 288.9 495 40.2
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 8.2e-71 271.9 493 43.8
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 6.8e-65 252.3 441 41.0
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 3.7e-63 246.5 515 38.3
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 7.0e-62 242.3 467 41.1
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.2e-61 241.5 512 36.7
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 1.2e-61 241.5 486 38.7
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 1.6e-61 241.1 573 34.4
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 1.6e-61 241.1 477 38.2
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 2.0e-61 240.7 482 39.8
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 1.0e-60 238.4 515 36.3
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.0e-60 238.4 515 36.3
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 1.7e-60 237.7 474 38.6
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 1.7e-60 237.7 482 38.8
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 5.0e-60 236.1 528 36.0
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.5e-59 234.6 515 36.1
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 1.9e-59 234.2 455 38.9
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 2.5e-59 233.8 472 39.2
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 2.5e-59 233.8 474 39.9
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 4.2e-59 233.0 474 39.2
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 5.5e-59 232.6 468 39.5
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 1.2e-58 231.5 455 36.9
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 1.2e-58 231.5 462 37.7
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 3.6e-58 229.9 446 37.9
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 6.1e-58 229.2 502 35.9
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 8.0e-58 228.8 481 38.9
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 1.0e-57 228.4 441 38.5
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 2.3e-57 227.3 519 36.0
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 5.2e-57 226.1 475 37.9
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 1.5e-56 224.6 499 35.5
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 1.3e-55 221.5 500 37.4
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 1.7e-55 221.1 465 35.9
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 1.1e-54 218.4 499 36.7
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 1.1e-54 218.4 509 34.4
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.4e-54 217.2 485 36.7
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 9.1e-54 215.3 464 37.9
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 2.9e-52 210.3 492 34.3
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 8.6e-52 208.8 492 34.3
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 1.1e-51 208.4 503 35.4
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 4.2e-51 206.5 463 35.4
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 4.2e-51 206.5 465 35.3
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 5.5e-51 206.1 210 57.1
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 2.1e-50 204.1 547 33.8
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 2.1e-50 204.1 518 34.0
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 3.6e-50 203.4 477 35.0
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 2.3e-49 200.7 481 33.3
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 8.9e-49 198.7 525 33.5
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 4.4e-48 196.4 471 35.5
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 1.3e-47 194.9 501 34.9
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 2.9e-47 193.7 514 32.9
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 6.3e-47 192.6 517 32.1
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 8.3e-47 192.2 525 33.9
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 1.4e-46 191.4 523 33.1
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 2.4e-46 190.7 529 32.5
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 1.2e-45 188.3 547 33.1
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 2.0e-45 187.6 443 34.5
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 2.7e-45 187.2 473 33.6
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 3.5e-45 186.8 536 31.5
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 2.3e-44 184.1 560 35.4
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 3.9e-44 183.3 469 33.3
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 4.3e-43 179.9 527 33.0
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 7.3e-43 179.1 519 32.0
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 8.0e-42 175.6 514 31.3
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 1.8e-41 174.5 495 31.9
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 4.0e-41 173.3 503 30.4
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 4.0e-41 173.3 492 30.7
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 4.0e-41 173.3 523 32.1
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 5.2e-41 172.9 462 31.8
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 1.2e-40 171.8 501 30.1
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 1.2e-40 171.8 166 58.4
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 2.6e-40 170.6 481 31.2
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 9.8e-40 168.7 476 31.9
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 9.8e-40 168.7 476 31.9
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.7e-39 167.9 515 31.8
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 3.7e-39 166.8 522 31.6
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 6.4e-39 166.0 519 30.1
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 8.3e-39 165.6 461 30.2
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 8.3e-39 165.6 472 31.8
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 1.1e-38 165.2 520 30.4
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 1.4e-38 164.9 509 31.4
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 4.1e-38 163.3 502 31.7
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 1.6e-37 161.4 199 48.2
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 3.5e-37 160.2 463 31.3
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 4.6e-37 159.8 205 47.8
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 6.0e-37 159.5 177 56.5
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 1.3e-36 158.3 462 31.6
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 1.3e-36 158.3 115 69.6
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 3.9e-36 156.8 490 31.4
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 3.9e-36 156.8 511 29.7
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 8.6e-36 155.6 488 29.5
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 1.6e-34 151.4 163 52.8
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 2.1e-34 151.0 482 29.5
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 2.3e-33 147.5 430 31.2
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 3.1e-33 147.1 543 29.8
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 1.2e-32 145.2 437 29.1
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 5.4e-30 136.3 437 29.1
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 1.2e-29 135.2 411 31.9
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 1.3e-28 131.7 216 41.7
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 2.3e-28 131.0 425 29.9
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 2.1e-26 124.4 400 30.2
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 4.0e-25 120.2 89 66.3
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 1.7e-23 114.8 431 30.2
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 3.7e-23 113.6 519 26.6
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 6.4e-23 112.8 397 29.0
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 1.2e-21 108.6 412 29.1
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 7.8e-21 105.9 85 63.5
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 6.6e-20 102.8 180 35.6
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 8.6e-20 102.4 163 45.4
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 1.5e-19 101.7 67 70.1
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 3.3e-19 100.5 154 40.3
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 2.9e-15 87.4 340 32.6
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 1.1e-14 85.5 64 67.2
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 1.1e-14 85.5 155 36.8
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 1.6e-10 71.6 97 39.2
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 2.8e-10 70.9 85 41.2
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 3.6e-10 70.5 149 28.2
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 8.1e-10 69.3 128 33.6
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 1.1e-09 68.9 52 65.4
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 3.1e-09 67.4 76 48.7
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 6.9e-09 66.2 66 47.0
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 6.9e-09 66.2 73 45.2
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 9.0e-09 65.9 76 46.1
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 9.0e-09 65.9 82 39.0
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 1.5e-08 65.1 134 31.3
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 1.5e-08 65.1 85 40.0
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 2.0e-08 64.7 79 39.2
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 2.0e-08 64.7 78 43.6
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 2.0e-08 64.7 72 41.7
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 2.0e-08 64.7 77 40.3
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 2.6e-08 64.3 84 39.3
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 3.4e-08 63.9 66 43.9
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 5.8e-08 63.2 61 47.5
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 7.6e-08 62.8 54 48.1
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 7.6e-08 62.8 126 31.7
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 7.6e-08 62.8 214 26.2
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 7.6e-08 62.8 107 33.6
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 9.9e-08 62.4 104 32.7
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 1.3e-07 62.0 189 25.9
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 1.7e-07 61.6 56 53.6
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 1.7e-07 61.6 94 35.1
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 2.2e-07 61.2 72 40.3
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 2.2e-07 61.2 85 34.1
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 2.2e-07 61.2 86 39.5
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 3.8e-07 60.5 102 34.3
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 3.8e-07 60.5 78 37.2
C07p46840 Brassica napus HOM05D006793 ORTHO05D003476 4.9e-07 60.1 173 28.9
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 4.9e-07 60.1 77 35.1
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 6.4e-07 59.7 56 46.4
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 8.4e-07 59.3 78 37.2
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 8.4e-07 59.3 75 38.7
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 1.1e-06 58.9 50 52.0
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 1.1e-06 58.9 112 33.0
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 1.4e-06 58.5 50 50.0
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 1.4e-06 58.5 130 30.0
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 1.4e-06 58.5 125 28.8
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 1.4e-06 58.5 85 31.8
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 1.4e-06 58.5 57 47.4
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 1.9e-06 58.2 73 39.7
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 1.9e-06 58.2 154 27.9
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 3.2e-06 57.4 75 37.3
Prupe.8G056400 Prunus persica HOM05D015681 ORTHO05D003476 3.2e-06 57.4 93 36.6
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 4.2e-06 57.0 186 25.3
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 4.2e-06 57.0 88 35.2
FAN08G2522 Fragaria x ananassa HOM05D015681 ORTHO05D003476 4.2e-06 57.0 61 44.3
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 4.2e-06 57.0 58 41.4
HPP92_025600 Vanilla planifolia HOM05D061565 ORTHO05D003476 5.4e-06 56.6 91 35.2
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 9.3e-06 55.8 50 46.0
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 9.3e-06 55.8 50 46.0
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 9.3e-06 55.8 50 46.0


User provided reference genes

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