Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 2.5e-65 251.9 124 100.0
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 3.7e-64 248.1 124 98.4
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 2.3e-58 228.8 125 91.2
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 1.3e-48 196.4 126 80.2
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 1.3e-37 159.8 120 71.7
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.0e-18 95.5 124 46.0
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 5.2e-18 94.7 73 67.1
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 6.8e-18 94.4 102 54.9
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.2e-17 93.6 119 49.6
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.2e-17 93.6 109 54.1
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 1.5e-17 93.2 130 43.8
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 2.0e-17 92.8 113 47.8
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 2.6e-17 92.4 126 43.7
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 4.4e-17 91.7 118 45.8
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 7.5e-17 90.9 125 46.4
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.7e-16 89.7 119 44.5
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.7e-16 89.7 119 44.5
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 1.7e-16 89.7 130 46.2
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.8e-16 89.0 126 46.8
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.7e-16 88.6 119 44.5
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 6.3e-16 87.8 121 46.3
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 6.3e-16 87.8 129 44.2
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 1.4e-15 86.7 126 46.0
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 1.8e-15 86.3 124 38.7
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 2.4e-15 85.9 119 44.5
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 3.1e-15 85.5 121 44.6
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.1e-15 85.5 118 46.6
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.1e-15 85.5 103 49.5
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 4.1e-15 85.1 108 47.2
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 4.1e-15 85.1 106 50.0
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 5.4e-15 84.7 106 47.2
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.2e-14 83.6 134 38.8
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.6e-14 83.2 128 43.8
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.6e-14 83.2 108 51.9
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.0e-14 82.8 76 51.3
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 2.0e-14 82.8 106 45.3
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 5.9e-14 81.3 76 51.3
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.7e-14 80.9 76 51.3
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 1.0e-13 80.5 124 47.6
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 1.3e-13 80.1 118 44.1
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 1.7e-13 79.7 104 50.0
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 1.7e-13 79.7 110 45.5
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.7e-13 79.7 122 42.6
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 1.7e-13 79.7 122 42.6
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.7e-13 79.7 120 44.2
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.2e-13 79.3 110 45.5
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.9e-13 79.0 120 45.0
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 2.9e-13 79.0 137 40.1
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.9e-13 79.0 125 43.2
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 3.8e-13 78.6 133 42.1
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 5.0e-13 78.2 120 42.5
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 6.5e-13 77.8 128 40.6
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 8.5e-13 77.4 102 50.0
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 1.1e-12 77.0 92 48.9
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.1e-12 77.0 126 42.1
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 1.5e-12 76.6 94 45.7
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.5e-12 76.6 94 45.7
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.5e-12 76.6 94 45.7
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.5e-12 76.6 110 43.6
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 1.5e-12 76.6 122 44.3
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 1.9e-12 76.3 79 51.9
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 2.5e-12 75.9 76 53.9
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.5e-12 75.9 92 45.7
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 2.5e-12 75.9 123 41.5
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 2.5e-12 75.9 112 48.2
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 4.2e-12 75.1 136 37.5
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 7.2e-12 74.3 122 41.0
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 7.2e-12 74.3 111 44.1
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 7.2e-12 74.3 74 55.4
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 9.4e-12 73.9 81 45.7
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.4e-12 73.9 94 43.6
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 1.2e-11 73.6 92 47.8
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.2e-11 73.6 103 46.6
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.2e-11 73.6 103 45.6
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.6e-11 73.2 94 44.7
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 2.1e-11 72.8 104 46.2
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 2.7e-11 72.4 116 40.5
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 2.7e-11 72.4 148 38.5
Hma1.2p1_0454F.1_g156290 Hydrangea macrophylla HOM05D005304 ORTHO05D004438 3.6e-11 72.0 132 37.1
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 4.7e-11 71.6 72 48.6
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.1e-11 71.2 94 43.6
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 6.1e-11 71.2 119 37.0
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 8.0e-11 70.9 73 53.4
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 8.0e-11 70.9 94 42.6
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 1.0e-10 70.5 146 37.0
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.4e-10 70.1 94 42.6
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 1.4e-10 70.1 125 39.2
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 2.3e-10 69.3 87 42.5
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 3.0e-10 68.9 116 44.0
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 3.0e-10 68.9 73 50.7
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 4.0e-10 68.6 110 40.9
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 5.2e-10 68.2 114 39.5
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.2e-10 68.2 79 48.1
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.2e-10 68.2 83 45.8
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 5.2e-10 68.2 83 45.8
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 5.2e-10 68.2 97 41.2
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 6.8e-10 67.8 61 55.7
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 6.8e-10 67.8 137 33.6
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.2e-09 67.0 119 36.1
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.6e-09 65.9 91 46.2
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.4e-09 65.5 120 36.7
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 3.4e-09 65.5 123 43.9
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 3.4e-09 65.5 101 43.6
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 3.4e-09 65.5 111 42.3
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 4.4e-09 65.1 94 42.6
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 4.4e-09 65.1 122 36.9
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 4.4e-09 65.1 71 46.5
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 4.4e-09 65.1 71 46.5
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 5.7e-09 64.7 153 30.7
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 5.7e-09 64.7 120 38.3
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 7.5e-09 64.3 84 45.2
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 1.7e-08 63.2 135 35.6
BcaNung04931 Brassica carinata HOM05D008699 ORTHO05D012283 2.8e-08 62.4 132 39.4
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 2.8e-08 62.4 72 50.0
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 3.7e-08 62.0 72 50.0
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.9e-08 61.6 77 48.1
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 4.9e-08 61.6 70 52.9
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 6.3e-08 61.2 65 46.2
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 6.3e-08 61.2 89 42.7
CAN.G135.30 Capsicum annuum HOM05D021137 ORTHO05D004438 8.3e-08 60.8 102 39.2
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 8.3e-08 60.8 77 45.5
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 8.3e-08 60.8 70 50.0
BcaB04g21232 Brassica carinata HOM05D008699 ORTHO05D012283 1.1e-07 60.5 130 37.7
BcaNung04932 Brassica carinata HOM05D008699 ORTHO05D012283 1.1e-07 60.5 130 37.7
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 1.1e-07 60.5 72 48.6
BcaC05g29454 Brassica carinata HOM05D008699 ORTHO05D012283 1.8e-07 59.7 126 38.9
A05p38650 Brassica napus HOM05D008699 ORTHO05D012283 1.8e-07 59.7 126 38.9
BraA05t22656Z Brassica rapa HOM05D008699 ORTHO05D012283 1.8e-07 59.7 126 38.9
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 1.8e-07 59.7 98 39.8
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 2.4e-07 59.3 89 44.9
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 2.4e-07 59.3 126 35.7
C05p57520 Brassica napus HOM05D008699 ORTHO05D012283 3.1e-07 58.9 126 38.9
BolC5t34409H Brassica oleracea HOM05D008699 ORTHO05D012283 3.1e-07 58.9 126 38.9
Carub.0003s0976 Capsella rubella HOM05D008699 ORTHO05D012283 3.1e-07 58.9 130 36.2
Eucgr.G02732 Eucalyptus grandis HOM05D005304 ORTHO05D004438 3.1e-07 58.9 93 37.6
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.1e-07 58.9 77 46.8
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 4.1e-07 58.5 72 47.2
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 9.2e-07 57.4 102 41.2
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 1.6e-06 56.6 95 45.3
BcaC01g04175 Brassica carinata HOM05D008699 ORTHO05D012283 2.0e-06 56.2 129 34.9
C03p44240 Brassica napus HOM05D008699 ORTHO05D012283 2.0e-06 56.2 129 34.9
BolC3t16694H Brassica oleracea HOM05D008699 ORTHO05D012283 2.0e-06 56.2 129 34.9
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 2.0e-06 56.2 86 40.7
Ciclev10033003m.g Citrus clementina HOM05D005304 ORTHO05D004438 2.7e-06 55.8 82 41.5
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.7e-06 55.8 102 35.3
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 3.5e-06 55.5 86 40.7
BolC1t05388H Brassica oleracea HOM05D008699 ORTHO05D012283 4.5e-06 55.1 130 35.4
BraA01t04245Z Brassica rapa HOM05D008699 ORTHO05D012283 4.5e-06 55.1 130 35.4
CSS0000743 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 4.5e-06 55.1 68 48.5
CSS0018861 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 4.5e-06 55.1 68 48.5
CSS0040409 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 4.5e-06 55.1 68 48.5
CSS0049445 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 4.5e-06 55.1 68 48.5
ClCG01G013950 Citrullus lanatus HOM05D026992 ORTHO05D004438 4.5e-06 55.1 102 38.2
AL3G21910 Arabidopsis lyrata HOM05D008699 ORTHO05D012283 5.9e-06 54.7 130 34.6
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 5.9e-06 54.7 74 40.5
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 5.9e-06 54.7 70 44.3
A03p36610 Brassica napus HOM05D008699 ORTHO05D012283 7.7e-06 54.3 127 35.4
C08p03530 Brassica napus HOM05D010843 ORTHO05D012975 7.7e-06 54.3 58 48.3
BolC8t47157H Brassica oleracea HOM05D010843 ORTHO05D012975 7.7e-06 54.3 58 48.3
BraA03t12826Z Brassica rapa HOM05D008699 ORTHO05D012283 7.7e-06 54.3 127 35.4
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 7.7e-06 54.3 108 35.2
Solyc11g007870.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 7.7e-06 54.3 117 34.2
Sopen11g003730 Solanum pennellii HOM05D021137 ORTHO05D004438 7.7e-06 54.3 71 43.7


User provided reference genes

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