Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 1.4e-246 855.9 440 100.0
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 6.7e-246 853.6 440 99.5
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 1.3e-241 839.3 440 97.7
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 2.1e-231 805.4 440 93.4
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 2.8e-199 698.7 428 81.3
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 4.7e-199 698.0 430 81.2
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.4e-198 696.4 428 81.1
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.4e-198 695.7 428 80.6
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.4e-198 695.7 428 80.6
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.8e-198 694.1 428 80.1
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 8.9e-198 693.7 428 80.8
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 1.2e-197 693.3 430 79.8
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.5e-197 693.0 429 79.7
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 1.5e-197 693.0 428 80.1
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 2.0e-197 692.6 430 82.6
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 3.4e-197 691.8 442 79.0
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 3.4e-197 691.8 442 79.0
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 5.8e-197 691.0 429 79.7
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.7e-196 689.5 443 80.1
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.2e-196 689.1 428 82.5
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.9e-196 688.7 428 82.5
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 2.9e-196 688.7 430 78.6
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 1.4e-195 686.4 428 82.5
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 1.4e-195 686.4 430 77.9
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 1.9e-195 686.0 430 80.2
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 4.2e-195 684.9 433 79.2
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 4.2e-195 684.9 440 79.1
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 7.1e-195 684.1 428 80.1
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 7.8e-194 680.6 426 80.8
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.3e-193 679.9 432 78.0
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.3e-193 679.9 432 78.0
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 1.3e-193 679.9 430 81.2
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 1.7e-193 679.5 440 77.3
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 1.5e-192 676.4 429 78.6
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.5e-192 675.6 430 80.0
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 3.3e-192 675.2 440 78.6
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 3.3e-192 675.2 446 78.5
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 3.3e-192 675.2 429 78.8
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 4.3e-192 674.9 428 77.6
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 1.6e-191 672.9 433 77.4
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 1.6e-191 672.9 428 79.0
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.1e-191 672.5 429 78.8
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 1.8e-190 669.5 428 78.0
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 3.1e-190 668.7 428 77.8
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 3.1e-190 668.7 428 78.0
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 3.1e-190 668.7 428 78.0
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 4.0e-190 668.3 427 79.6
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 5.3e-190 667.9 428 78.0
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 5.3e-190 667.9 428 78.0
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 6.9e-190 667.5 428 77.8
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 1.5e-189 666.4 428 78.0
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.5e-189 666.4 429 78.3
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 3.4e-189 665.2 428 77.3
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 4.4e-189 664.8 435 77.2
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 5.8e-189 664.5 448 76.3
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 7.6e-189 664.1 428 77.6
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 7.6e-189 664.1 428 77.6
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 7.6e-189 664.1 428 77.6
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 9.9e-189 663.7 429 77.2
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.3e-188 663.3 433 77.4
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 2.2e-188 662.5 429 76.9
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 3.8e-188 661.8 428 77.3
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 3.8e-188 661.8 428 77.3
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 3.8e-188 661.8 428 76.6
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 6.4e-188 661.0 429 76.5
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 8.4e-188 660.6 428 77.6
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 8.4e-188 660.6 467 74.9
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 1.1e-187 660.2 429 76.7
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 1.9e-187 659.4 437 76.4
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.9e-187 659.4 429 77.2
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 2.4e-187 659.1 428 76.4
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 5.4e-187 657.9 428 76.6
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 7.1e-187 657.5 431 77.0
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.6e-186 656.4 428 79.9
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 1.6e-186 656.4 489 71.0
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 2.7e-186 655.6 429 77.4
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.7e-186 655.6 428 75.5
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 4.6e-186 654.8 441 75.3
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 6.0e-186 654.4 433 76.0
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 6.0e-186 654.4 429 76.9
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 7.8e-186 654.1 389 82.8
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 7.8e-186 654.1 430 78.4
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 1.0e-185 653.7 430 76.7
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 1.3e-185 653.3 433 75.8
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 3.3e-184 648.7 433 76.2
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 4.3e-184 648.3 428 77.3
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 4.3e-184 648.3 430 74.7
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 7.3e-184 647.5 429 76.9
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 9.6e-184 647.1 428 77.3
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 9.6e-184 647.1 430 76.5
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 9.6e-184 647.1 431 76.6
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 1.3e-183 646.7 430 75.8
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 2.8e-183 645.6 403 78.7
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 3.6e-183 645.2 431 74.5
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 3.6e-183 645.2 428 75.9
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 6.2e-183 644.4 442 73.8
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 8.1e-183 644.0 430 76.0
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 1.1e-182 643.7 435 75.9
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 1.1e-182 643.7 442 73.8
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 3.1e-182 642.1 428 76.6
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 9.0e-182 640.6 430 76.3
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 1.2e-181 640.2 430 74.7
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.2e-181 640.2 449 73.7
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.7e-180 636.3 430 74.4
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 2.9e-180 635.6 432 76.4
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.1e-179 633.6 430 74.9
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 1.1e-179 633.6 430 73.7
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 1.9e-179 632.9 438 74.7
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 1.9e-179 632.9 429 74.8
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 3.2e-179 632.1 430 74.0
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 5.4e-179 631.3 429 74.6
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 9.3e-179 630.6 430 73.7
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 2.1e-178 629.4 433 74.8
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 1.0e-177 627.1 432 73.8
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 5.1e-177 624.8 459 71.7
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 6.7e-177 624.4 439 72.4
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.8e-175 618.2 430 73.5
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 5.3e-174 614.8 544 61.8
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 1.5e-173 613.2 428 72.2
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 2.6e-173 612.5 506 65.0
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 4.5e-173 611.7 430 73.0
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 5.5e-171 604.7 428 72.7
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 2.1e-170 602.8 429 71.6
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 2.1e-170 602.8 430 71.9
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 1.5e-168 596.7 390 75.6
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 4.8e-167 591.7 397 75.6
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 1.8e-166 589.7 406 74.1
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 2.4e-166 589.3 362 81.8
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 4.0e-166 588.6 413 71.7
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 5.3e-166 588.2 379 76.3
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 5.3e-166 588.2 385 74.5
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 5.5e-163 578.2 386 73.1
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 7.1e-163 577.8 342 81.6
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.0e-161 573.9 428 67.8
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 8.7e-161 570.9 337 85.5
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 8.7e-161 570.9 362 77.9
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 4.8e-151 538.5 389 69.4
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 5.0e-148 528.5 344 77.3
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 7.2e-147 524.6 330 78.8
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 3.6e-146 522.3 335 76.7
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 3.9e-145 518.8 370 70.0
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 8.8e-145 517.7 430 64.2
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 9.7e-144 514.2 371 70.6
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 7.0e-142 508.1 337 76.6
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 1.1e-139 500.7 393 67.4
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 3.6e-138 495.7 426 61.7
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.5e-136 490.3 346 72.8
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.8e-126 456.8 261 83.9
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 2.1e-122 443.4 329 67.8
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 1.2e-114 417.5 293 71.7
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 2.8e-114 416.4 257 80.9
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 4.5e-109 399.1 378 57.7
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 7.0e-102 375.2 230 82.6
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.2e-95 353.6 243 72.8
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 8.9e-89 331.6 232 72.8
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 6.8e-81 305.4 367 46.3
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 8.9e-81 305.1 182 81.9
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 9.9e-80 301.6 355 49.0
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.7e-79 300.8 181 80.1
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 2.5e-67 260.4 154 80.5
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 3.4e-64 250.0 221 65.2
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.9e-59 234.2 186 62.4
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.9e-59 234.2 186 62.4
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.6e-59 231.9 244 58.2
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 4.8e-58 229.6 146 76.0
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 6.7e-44 182.6 157 64.3
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 2.2e-42 177.6 101 85.1
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.0e-40 171.0 297 43.1
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.3e-31 141.7 220 46.4
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 2.3e-28 131.0 82 82.9
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 7.2e-22 109.4 89 65.2
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 6.1e-21 106.3 60 86.7
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 8.8e-20 102.4 79 69.6
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 8.8e-20 102.4 63 84.1
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 8.8e-20 102.4 63 84.1
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.7e-19 99.0 90 56.7
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 1.7e-15 88.2 48 83.3
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 8.5e-15 85.9 50 80.0
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 3.6e-13 80.5 46 80.4
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 2.0e-08 64.7 74 48.6
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 7.7e-08 62.8 74 48.6
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 7.7e-08 62.8 43 69.8
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 2.2e-07 61.2 74 48.6
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 1.5e-06 58.5 28 89.3


User provided reference genes

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