Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 0.0e+00 1092.4 552 100.0
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 1.9e-285 985.3 563 90.2
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 2.9e-278 961.4 554 88.3
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.5e-266 922.5 563 84.7
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 2.6e-247 858.6 561 78.8
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 3.6e-244 848.2 561 76.8
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 8.8e-243 843.6 560 77.5
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 1.5e-242 842.8 562 77.4
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 4.3e-242 841.3 563 77.3
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 3.1e-240 835.1 561 76.8
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 5.9e-239 830.9 561 75.0
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 1.0e-238 830.1 560 76.8
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.7e-238 829.3 561 75.2
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 2.2e-238 828.9 563 75.5
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 5.0e-238 827.8 568 74.6
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 6.5e-238 827.4 557 76.1
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 1.1e-237 826.6 570 74.7
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.9e-237 825.9 561 74.9
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.5e-237 825.5 561 75.0
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 4.2e-237 824.7 550 75.6
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 9.4e-237 823.5 569 73.5
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 2.7e-236 822.0 554 76.2
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 3.6e-236 821.6 560 74.8
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 4.7e-236 821.2 568 74.1
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 1.0e-235 820.1 569 73.1
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 6.7e-235 817.4 564 74.8
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 6.7e-235 817.4 563 72.5
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 3.3e-234 815.1 563 74.4
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 1.3e-233 813.1 561 74.2
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 4.8e-233 811.2 570 72.8
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 6.3e-233 810.8 570 73.3
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 1.4e-232 809.7 560 73.2
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 2.4e-232 808.9 561 73.1
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 4.1e-232 808.1 561 73.6
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 5.3e-232 807.7 571 72.5
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 7.0e-232 807.4 564 73.0
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 9.1e-232 807.0 571 72.5
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 3.5e-231 805.1 557 73.4
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 7.7e-231 803.9 571 72.7
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 7.7e-231 803.9 561 72.2
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 7.7e-231 803.9 561 73.4
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 1.3e-230 803.1 561 73.3
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 1.3e-230 803.1 561 73.4
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 2.9e-230 802.0 561 72.9
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 6.5e-230 800.8 561 73.6
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 8.5e-230 800.4 561 74.0
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 8.5e-230 800.4 563 73.4
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 1.1e-229 800.0 561 72.4
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 3.2e-229 798.5 529 78.1
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.2e-228 796.6 561 73.1
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.6e-228 796.2 562 73.1
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.1e-228 795.8 561 73.3
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.7e-228 795.4 561 73.1
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 4.7e-228 794.7 561 72.7
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 8.0e-228 793.9 562 72.6
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.0e-227 793.5 562 72.6
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 3.0e-227 792.0 596 69.5
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 5.2e-227 791.2 561 71.8
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 1.5e-226 789.6 564 72.2
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 2.6e-226 788.9 557 72.5
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 5.7e-226 787.7 564 72.3
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 7.5e-226 787.3 561 71.3
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.3e-225 786.6 578 71.3
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 1.4e-224 783.1 555 72.1
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 2.4e-224 782.3 561 71.5
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 2.6e-223 778.9 586 68.9
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.0e-222 776.9 566 70.0
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.0e-222 776.9 566 70.0
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.0e-222 776.9 566 70.0
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.3e-222 776.5 561 72.0
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 5.0e-222 774.6 570 70.7
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 8.5e-222 773.9 535 74.6
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 8.5e-222 773.9 577 68.8
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 1.9e-221 772.7 566 70.1
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 3.2e-221 771.9 563 69.8
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 4.2e-221 771.5 566 70.0
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 4.7e-220 768.1 566 69.6
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 4.7e-220 768.1 541 73.0
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.0e-219 766.9 559 70.7
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.8e-219 766.1 586 67.6
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 2.3e-219 765.8 566 68.9
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 2.0e-218 762.7 562 69.9
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 5.7e-218 761.1 566 68.9
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 7.5e-218 760.8 563 69.6
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 1.3e-217 760.0 554 69.9
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 1.3e-217 760.0 567 68.8
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 1.7e-217 759.6 563 69.4
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 3.7e-217 758.4 563 69.1
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 8.3e-217 757.3 576 68.2
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 1.4e-216 756.5 563 69.8
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 1.8e-216 756.1 543 71.6
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 1.8e-216 756.1 562 70.3
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 4.1e-216 755.0 562 69.9
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 7.0e-216 754.2 547 70.2
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 2.7e-215 752.3 556 70.1
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 3.5e-215 751.9 561 68.3
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 5.9e-215 751.1 561 69.3
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 2.9e-214 748.8 569 68.0
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 1.5e-213 746.5 561 70.1
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 3.2e-213 745.3 568 68.7
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 5.5e-213 744.6 562 69.4
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 1.0e-211 740.3 518 73.7
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 3.4e-210 735.3 561 67.2
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 2.2e-209 732.6 552 67.6
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 4.9e-209 731.5 560 67.5
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 1.0e-206 723.8 544 68.6
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 6.6e-206 721.1 557 67.9
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 4.3e-205 718.4 565 66.9
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.0e-203 713.8 600 63.8
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.9e-201 705.7 564 65.8
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 8.3e-201 704.1 567 64.2
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 3.5e-199 698.7 493 72.2
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 2.3e-198 696.0 557 65.4
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.2e-194 683.7 492 70.7
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.4e-192 676.0 549 65.6
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.5e-189 666.8 566 60.2
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.7e-185 653.3 550 64.0
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.2e-180 637.1 446 73.1
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 4.7e-180 635.2 553 58.2
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.0e-179 632.1 567 60.5
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.2e-162 577.4 548 53.3
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 7.6e-162 574.7 555 53.9
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 7.1e-160 568.2 435 68.5
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 1.0e-158 564.3 402 71.1
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 2.4e-155 553.1 407 71.3
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 1.2e-154 550.8 569 53.8
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.3e-145 520.8 391 69.6
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 1.3e-140 504.2 553 49.0
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.1e-140 503.4 484 53.3
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 7.7e-130 468.4 326 73.6
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 3.8e-121 439.5 267 82.0
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 7.0e-115 418.7 256 79.3
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 2.0e-109 400.6 324 65.4
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 4.1e-107 392.9 266 74.1
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 7.7e-106 388.7 341 61.0
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 7.7e-106 388.7 331 61.0
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 3.8e-105 386.3 256 74.6
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 1.4e-102 377.9 238 79.4
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 4.4e-101 372.9 246 74.0
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 1.7e-100 370.9 258 70.9
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 5.5e-96 355.9 233 78.1
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 2.8e-79 300.4 262 59.5
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 9.5e-64 248.8 251 56.2
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 3.8e-52 210.3 141 72.3
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 6.4e-52 209.5 192 57.3
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.4e-46 191.8 127 72.4
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.4e-46 191.0 127 73.2
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.1e-46 190.7 127 74.0
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 5.3e-46 189.9 127 74.0
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.0e-45 188.0 127 72.4
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 9.9e-37 159.1 98 77.6
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 1.2e-34 152.1 115 65.2
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 3.3e-24 117.5 106 58.5
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.1e-22 110.9 96 62.5
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 4.1e-22 110.5 96 62.5
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 2.6e-21 107.8 66 77.3
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 4.5e-21 107.1 66 75.8
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 1.3e-20 105.5 71 70.4
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 2.9e-20 104.4 66 74.2
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 2.7e-18 97.8 59 72.9
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 5.7e-16 90.1 245 27.3
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 5.7e-16 90.1 65 69.2
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 1.0e-12 79.3 54 72.2
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 1.3e-07 62.4 54 50.0
Thecc.03G047200 Theobroma cacao HOM05D000075 ORTHO05D408647 1.4e-06 58.9 64 62.5


User provided reference genes

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