Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 2.5e-213 745.3 427 100.0
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 7.1e-200 700.7 427 94.4
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 1.6e-180 636.3 432 85.6
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 2.3e-158 562.8 459 73.9
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.3e-137 493.8 272 93.0
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 2.3e-89 333.6 437 50.8
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 2.1e-87 327.0 469 47.5
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 6.4e-84 315.5 410 50.5
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 7.3e-80 302.0 471 49.3
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 3.1e-78 296.6 435 50.6
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.3e-76 291.2 437 50.8
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 5.4e-75 285.8 468 43.4
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 4.6e-74 282.7 432 44.2
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 8.7e-73 278.5 431 46.6
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.1e-72 278.1 435 50.3
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 1.1e-72 278.1 435 50.3
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 1.5e-72 277.7 431 47.8
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 5.6e-72 275.8 435 50.1
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 1.2e-69 268.1 474 42.6
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 4.5e-69 266.2 424 44.6
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 7.6e-69 265.4 474 42.4
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 8.4e-68 261.9 417 43.2
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 8.4e-68 261.9 417 43.2
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 8.4e-68 261.9 435 45.3
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 1.4e-67 261.2 422 43.1
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.9e-67 260.8 434 43.5
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 1.6e-66 257.7 431 42.0
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 7.9e-66 255.4 439 44.9
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 1.8e-65 254.2 429 42.0
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.0e-65 253.4 424 40.6
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 8.7e-65 251.9 429 43.8
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 2.5e-64 250.4 412 44.7
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 4.3e-64 249.6 436 42.4
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 9.6e-64 248.4 403 44.2
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 2.1e-63 247.3 437 46.9
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.8e-63 246.9 437 41.6
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 4.8e-63 246.1 423 43.0
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 2.4e-62 243.8 428 42.1
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 4.0e-62 243.0 429 43.1
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 5.3e-62 242.7 436 40.6
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 9.0e-62 241.9 454 41.4
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.2e-61 241.5 299 48.5
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 1.2e-61 241.5 429 42.2
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 2.0e-61 240.7 423 42.8
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.0e-61 240.7 435 44.8
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.0e-61 240.7 414 38.9
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 2.6e-61 240.4 359 47.9
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 3.4e-61 240.0 375 44.5
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 4.5e-61 239.6 387 40.6
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 7.6e-61 238.8 301 47.2
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 2.2e-60 237.3 423 40.2
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 2.9e-60 236.9 425 39.8
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 2.9e-60 236.9 421 36.6
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 6.5e-60 235.7 424 42.2
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.4e-59 234.6 423 41.6
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 3.5e-58 229.9 430 36.5
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.6e-58 229.6 424 35.8
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 3.9e-57 226.5 439 43.7
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 8.7e-57 225.3 408 41.7
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 1.1e-56 224.9 431 44.1
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 1.1e-56 224.9 428 45.6
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 2.5e-56 223.8 462 39.4
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.3e-55 221.5 446 43.5
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 6.3e-55 219.2 434 36.9
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.1e-54 218.4 430 34.4
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 4.1e-54 216.5 373 45.0
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 1.2e-53 214.9 422 37.2
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.2e-53 214.9 428 41.4
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 2.0e-53 214.2 274 46.0
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.4e-53 213.4 430 34.4
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 7.7e-53 212.2 299 43.1
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 1.3e-52 211.5 443 44.0
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 5.0e-52 209.5 429 34.0
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 5.0e-52 209.5 427 38.4
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 2.1e-50 204.1 426 34.0
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 1.4e-49 201.4 414 38.2
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.8e-49 201.1 425 34.8
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 5.7e-48 196.1 426 37.3
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 7.4e-48 195.7 414 33.6
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 6.3e-47 192.6 429 35.4
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 1.1e-46 191.8 429 35.4
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 9.1e-46 188.7 429 34.7
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 9.1e-46 188.7 465 31.6
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 1.2e-45 188.3 429 35.4
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 2.6e-45 187.2 430 34.0
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 2.2e-44 184.1 284 39.4
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 5.0e-44 183.0 437 37.5
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 4.2e-43 179.9 432 33.6
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 1.2e-42 178.3 290 40.0
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 3.0e-41 173.7 215 47.9
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 3.9e-41 173.3 432 31.9
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 6.7e-41 172.6 427 31.9
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 2.0e-40 171.0 456 37.1
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 7.4e-40 169.1 420 32.1
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 9.7e-40 168.7 283 38.9
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 1.3e-39 168.3 429 38.7
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 4.8e-39 166.4 292 37.3
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 1.1e-38 165.2 279 40.5
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 9.1e-38 162.2 400 34.0
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 1.5e-37 161.4 397 31.5
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 2.0e-37 161.0 273 35.5
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 2.0e-37 161.0 192 48.4
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 3.5e-37 160.2 423 29.1
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.8e-36 156.8 429 30.1
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.9e-35 154.5 281 34.9
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 3.2e-35 153.7 281 38.4
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 9.4e-35 152.1 213 42.3
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 1.2e-34 151.8 281 35.2
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 1.6e-34 151.4 432 31.2
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.7e-34 149.8 181 43.6
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 6.1e-34 149.4 203 41.9
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 6.1e-34 149.4 430 34.0
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 5.7e-32 142.9 145 52.4
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 2.2e-31 141.0 421 33.0
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 7.0e-30 136.0 227 37.4
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 2.0e-29 134.4 458 29.3
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 1.6e-26 124.8 277 32.5
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 1.0e-25 122.1 207 37.2
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.4e-25 121.7 282 31.6
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 7.0e-22 109.4 308 27.9
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 2.2e-20 104.4 305 28.5
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 7.2e-19 99.4 305 27.9
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 1.4e-17 95.1 134 40.3
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 2.3e-17 94.4 213 30.0
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 5.7e-16 89.7 247 37.7
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 2.2e-15 87.8 76 55.3
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 6.6e-12 76.3 271 39.9
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 9.8e-08 62.4 282 27.0
Sabra10G0125200 Salix brachista HOM05D000508 ORTHO05D000371 2.9e-07 60.8 92 40.2
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 4.9e-07 60.1 114 30.7


User provided reference genes

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