Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 1.6e-166 589.3 302 100.0
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 9.9e-164 580.1 302 98.0
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 3.8e-155 551.6 312 92.0
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 3.0e-144 515.4 303 89.8
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 2.5e-143 512.3 302 86.1
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 3.3e-143 511.9 302 86.1
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 3.3e-143 511.9 301 86.4
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 4.0e-141 505.0 302 85.4
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 2.6e-140 502.3 300 86.0
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 1.0e-139 500.4 302 84.4
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.0e-139 500.4 300 86.0
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 1.4e-138 496.5 302 83.4
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 3.2e-138 495.4 302 84.4
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.6e-137 493.0 302 84.4
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 8.7e-136 487.3 304 82.2
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.1e-135 486.9 301 83.4
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 3.3e-135 485.3 302 81.8
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 3.3e-135 485.3 273 91.6
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.1e-134 482.6 302 83.4
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 8.2e-134 480.7 303 81.8
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 2.4e-133 479.2 302 83.4
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.1e-133 478.4 303 81.5
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 9.0e-133 477.2 303 81.2
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.5e-132 476.5 303 79.2
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 2.6e-132 475.7 300 81.7
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 2.6e-132 475.7 303 80.5
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 4.5e-132 474.9 302 80.8
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 1.7e-131 473.0 302 79.5
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 2.2e-131 472.6 302 80.1
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.1e-130 470.3 302 82.1
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 1.9e-130 469.5 302 80.8
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 4.2e-130 468.4 302 81.8
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 5.5e-130 468.0 302 80.8
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 9.3e-130 467.2 305 80.0
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 4.6e-129 464.9 303 78.5
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 7.9e-129 464.2 302 81.1
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.0e-128 463.8 302 80.8
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 8.7e-128 460.7 302 77.8
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 5.7e-127 458.0 302 79.5
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 2.2e-126 456.1 299 78.9
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 3.7e-126 455.3 299 79.6
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 6.3e-126 454.5 302 76.5
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 8.2e-126 454.1 303 78.5
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.1e-125 453.8 303 78.2
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.8e-125 453.0 302 77.8
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 4.1e-125 451.8 303 78.2
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 4.1e-125 451.8 299 78.6
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.1e-125 451.8 299 78.6
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 5.3e-125 451.4 302 78.1
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 1.2e-124 450.3 299 77.9
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.5e-124 449.9 300 76.7
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 5.9e-124 448.0 300 80.0
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 7.7e-124 447.6 299 77.6
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 1.3e-123 446.8 295 78.6
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 2.9e-123 445.7 300 76.3
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.5e-123 444.5 313 75.4
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 8.5e-123 444.1 304 77.3
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 8.5e-123 444.1 297 78.5
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 3.2e-122 442.2 322 73.6
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 7.2e-122 441.0 301 77.7
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 9.4e-122 440.7 303 76.6
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.2e-121 440.3 300 74.7
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 3.6e-121 438.7 300 75.7
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 6.1e-121 438.0 302 76.2
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 6.1e-121 438.0 300 74.3
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 1.8e-120 436.4 302 76.5
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 2.3e-120 436.0 321 73.2
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 3.9e-120 435.3 302 76.5
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.9e-120 435.3 268 84.0
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 5.1e-120 434.9 267 83.1
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 8.8e-120 434.1 299 77.6
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.5e-119 433.3 297 77.8
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 9.7e-119 430.6 267 82.4
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 9.7e-119 430.6 261 83.9
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 2.2e-118 429.5 302 74.5
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.7e-118 428.7 304 75.7
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.7e-118 428.7 298 75.8
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 3.7e-118 428.7 300 75.0
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 6.3e-118 427.9 303 74.6
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 6.3e-118 427.9 267 82.4
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.3e-118 427.9 298 75.8
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 1.1e-117 427.2 353 68.3
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.4e-117 426.8 298 74.2
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.4e-117 426.8 294 77.6
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.4e-117 426.8 304 75.7
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 9.1e-117 424.1 307 73.0
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.5e-116 423.3 253 86.2
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 1.5e-116 423.3 300 75.3
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 4.5e-116 421.8 303 74.9
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 5.9e-116 421.4 291 76.6
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.7e-115 419.9 291 76.6
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 2.5e-114 416.0 297 75.1
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 4.2e-114 415.2 291 75.6
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.1e-113 412.9 269 80.3
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.4e-112 410.2 303 72.9
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.4e-112 410.2 279 77.8
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.4e-112 410.2 276 78.3
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 6.7e-112 407.9 300 72.7
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.5e-111 406.8 303 72.9
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 7.4e-111 404.4 265 79.2
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.1e-109 400.6 302 69.9
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 3.1e-109 399.1 297 73.1
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 2.0e-108 396.4 260 78.5
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 7.7e-108 394.4 215 92.1
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.7e-107 393.3 262 79.4
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 3.8e-107 392.1 321 66.7
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 5.0e-107 391.7 245 83.7
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 1.1e-106 390.6 247 82.2
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.5e-106 390.2 247 82.2
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 2.5e-106 389.4 247 82.2
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.7e-102 376.7 246 79.7
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 4.8e-102 375.2 302 68.5
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 3.1e-101 372.5 247 80.2
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 2.0e-100 369.8 306 66.0
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 2.2e-99 366.3 254 75.6
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 5.5e-98 361.7 244 78.7
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 4.7e-97 358.6 302 65.6
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 7.5e-95 351.3 294 65.6
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 3.5e-92 342.4 287 66.6
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 1.3e-91 340.5 302 63.6
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.9e-90 336.7 224 81.2
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.2e-89 334.0 219 79.5
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 1.2e-89 334.0 286 66.4
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 3.5e-84 315.8 238 72.7
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 7.7e-84 314.7 215 78.6
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.0e-83 314.3 179 89.9
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 6.6e-83 311.6 179 87.2
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 6.6e-83 311.6 246 69.9
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 4.4e-79 298.9 256 63.3
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 7.8e-76 288.1 257 62.3
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 1.7e-75 287.0 311 52.1
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 4.3e-74 282.3 303 52.8
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 7.3e-74 281.6 305 52.1
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 2.8e-73 279.6 277 57.4
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 1.4e-72 277.3 269 58.0
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.3e-70 270.8 179 75.4
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.4e-69 267.3 221 62.9
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 2.7e-68 263.1 231 61.9
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 3.9e-67 259.2 177 70.6
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.2e-64 248.8 163 77.3
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 1.5e-63 247.3 139 88.5
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.2e-61 239.6 203 64.5
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 1.7e-59 233.8 256 57.8
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 6.6e-51 205.3 173 65.9
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 9.6e-50 201.4 216 48.1
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.8e-48 197.2 158 67.7
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 7.6e-47 191.8 149 68.5
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 6.6e-43 178.7 120 80.8
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.3e-38 164.5 112 75.9
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.8e-31 139.0 82 85.4
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 7.1e-29 132.1 77 85.7
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 2.5e-26 123.6 64 93.8
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 7.1e-21 105.5 66 81.8
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.6e-17 94.4 97 53.6
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 4.5e-15 86.3 115 50.4
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 3.2e-13 80.1 88 53.4
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.5e-12 76.6 57 70.2
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 8.7e-11 72.0 50 76.0
TAR636G0182 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.9e-06 57.0 68 50.0


User provided reference genes

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