Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 0.0e+00 1364.4 688 100.0
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 0.0e+00 1225.3 646 94.7
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 0.0e+00 1181.8 646 91.6
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 0.0e+00 1079.7 646 82.7
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 1.3e-256 889.8 588 78.1
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.8e-224 783.1 646 62.8
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 3.9e-224 781.9 646 63.0
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.9e-223 779.6 647 64.0
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 2.4e-221 772.7 651 63.3
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 2.0e-220 769.6 648 63.0
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 1.7e-219 766.5 646 62.2
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 1.2e-217 760.4 647 61.5
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.6e-217 760.0 651 61.0
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 3.3e-215 752.3 647 62.6
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.8e-214 749.2 648 61.0
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 3.7e-214 748.8 648 62.2
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 8.2e-214 747.7 647 62.4
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 2.4e-213 746.1 646 60.5
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 1.2e-209 733.8 742 54.4
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 5.1e-208 728.4 656 60.5
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 1.5e-207 726.9 648 59.6
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 3.3e-207 725.7 646 59.8
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 7.4e-207 724.5 657 58.4
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 1.3e-206 723.8 655 60.2
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 4.8e-206 721.8 653 58.2
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 5.3e-205 718.4 641 58.7
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 6.9e-205 718.0 662 58.3
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 9.0e-205 717.6 631 60.7
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 7.2e-202 708.0 654 57.0
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.2e-201 707.2 658 56.2
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.6e-201 706.8 651 57.5
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 2.7e-201 706.1 715 55.4
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 2.7e-201 706.1 654 56.6
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 1.1e-199 700.7 665 55.8
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.9e-199 699.9 647 58.9
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 1.9e-199 699.9 653 56.0
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 2.5e-199 699.5 654 55.8
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 4.3e-199 698.7 650 56.5
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 4.3e-199 698.7 647 58.7
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.3e-198 697.2 657 57.8
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.8e-198 695.3 664 58.1
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 1.1e-197 694.1 631 59.4
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 1.4e-197 693.7 648 57.4
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 5.3e-197 691.8 659 56.1
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 7.7e-196 688.0 639 56.0
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 7.7e-196 688.0 688 55.5
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.1e-194 684.1 689 55.6
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 1.1e-194 684.1 650 56.3
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 1.9e-194 683.3 668 55.4
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.9e-194 683.3 653 56.2
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 2.5e-194 682.9 651 54.4
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 2.5e-194 682.9 656 56.6
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 3.2e-194 682.6 662 54.7
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 4.2e-194 682.2 584 60.6
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 1.2e-193 680.6 663 55.1
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 1.2e-193 680.6 656 56.1
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 2.1e-193 679.9 665 55.0
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 2.1e-193 679.9 651 56.2
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 3.6e-193 679.1 656 56.4
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 1.0e-192 677.6 655 55.6
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 2.3e-192 676.4 649 55.8
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.3e-192 676.4 695 55.0
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 3.0e-192 676.0 654 54.3
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 3.0e-192 676.0 700 54.3
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 1.5e-191 673.7 648 55.7
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.0e-191 673.3 649 57.8
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 3.3e-191 672.5 654 54.6
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 3.3e-191 672.5 654 54.4
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 4.4e-191 672.2 641 54.6
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 7.4e-191 671.4 666 55.3
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 1.3e-190 670.6 691 54.4
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.2e-190 669.8 647 57.2
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 2.8e-190 669.5 665 55.3
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 3.7e-190 669.1 669 56.5
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.4e-189 666.4 691 54.1
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 1.5e-188 663.7 648 56.0
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 3.4e-188 662.5 645 55.3
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 1.0e-187 661.0 679 53.9
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 3.8e-187 659.1 686 52.2
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 9.4e-186 654.4 652 54.4
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 1.2e-185 654.1 657 53.0
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 1.2e-185 654.1 658 52.3
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 1.6e-185 653.7 660 54.5
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 4.7e-185 652.1 714 52.5
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 1.0e-184 651.0 636 53.3
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 3.0e-184 649.4 659 54.2
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 5.2e-184 648.7 660 52.1
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 8.8e-184 647.9 671 53.1
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.1e-183 647.5 587 59.1
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 2.6e-183 646.4 562 60.3
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 4.4e-183 645.6 644 54.5
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 2.8e-182 642.9 640 55.9
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 4.8e-182 642.1 661 53.3
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 7.0e-181 638.3 635 53.5
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 2.6e-180 636.3 649 55.3
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 1.0e-179 634.4 638 55.3
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.1e-178 630.9 649 54.9
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 7.2e-178 628.2 656 52.3
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 7.2e-178 628.2 638 55.3
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 4.7e-177 625.5 619 55.3
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 4.0e-176 622.5 652 52.3
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 4.0e-176 622.5 667 52.2
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 8.8e-176 621.3 647 53.2
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.2e-175 620.9 647 54.1
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 7.5e-175 618.2 627 53.6
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 3.1e-173 612.8 658 51.8
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 4.1e-173 612.5 634 52.2
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 4.1e-173 612.5 655 53.3
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 7.0e-173 611.7 653 52.1
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 1.6e-172 610.5 596 55.5
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 5.9e-172 608.6 660 51.5
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 7.7e-172 608.2 660 51.5
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 1.3e-171 607.4 657 50.1
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.8e-171 605.9 656 52.6
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 3.8e-171 605.9 653 49.9
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 4.7e-169 599.0 665 50.7
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 1.5e-167 594.0 667 50.5
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 2.8e-166 589.7 631 52.1
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.4e-165 587.4 646 50.3
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 2.4e-165 586.6 628 51.6
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 1.0e-163 581.3 593 55.5
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 1.3e-158 564.3 632 49.2
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 3.1e-157 559.7 651 49.8
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 7.8e-156 555.1 648 46.9
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 7.8e-156 555.1 646 48.1
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 3.4e-151 539.7 643 49.6
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 5.8e-151 538.9 478 59.4
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 3.0e-147 526.6 672 45.2
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 9.5e-146 521.5 474 58.0
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 2.8e-145 520.0 473 56.7
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 1.2e-140 504.6 674 45.4
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 1.9e-133 480.7 632 44.9
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 2.1e-132 477.2 500 53.4
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.9e-125 454.1 384 63.5
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 3.2e-125 453.4 457 53.8
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 7.8e-124 448.7 729 40.1
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 3.1e-112 410.2 646 38.5
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 6.4e-110 402.5 356 59.3
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 9.3e-109 398.7 638 38.7
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 6.7e-107 392.5 650 37.8
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 8.7e-107 392.1 670 37.6
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 3.1e-104 383.6 636 37.6
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 2.9e-102 377.1 652 35.9
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 7.1e-101 372.5 630 37.6
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 2.7e-100 370.5 728 35.9
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 2.0e-95 354.4 757 35.4
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 9.3e-93 345.5 643 37.6
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.3e-91 340.9 655 36.2
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 2.5e-90 337.4 521 39.2
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 3.1e-88 330.5 486 39.9
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 2.5e-85 320.9 316 52.2
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 2.1e-84 317.8 515 40.2
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 1.0e-83 315.5 793 32.8
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 1.1e-80 305.4 739 31.1
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.7e-76 290.8 524 36.3
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.0e-74 284.6 216 66.2
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 3.8e-70 270.4 213 63.4
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 7.2e-69 266.2 490 35.5
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 9.4e-69 265.8 210 63.3
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 1.1e-56 225.7 331 40.8
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.7e-31 141.4 115 63.5
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.7e-31 141.4 108 65.7
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 6.6e-30 136.7 244 36.1
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 2.0e-26 125.2 197 39.6
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.0e-22 111.3 66 80.3
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 1.2e-18 99.4 70 67.1
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 5.8e-18 97.1 112 50.9
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 2.3e-14 85.1 153 37.3
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 2.5e-13 81.6 166 34.9
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 1.4e-11 75.9 54 70.4
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 8.9e-11 73.2 52 67.3
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 3.4e-10 71.2 54 59.3
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 6.0e-07 60.5 76 43.4


User provided reference genes

Program Settings