Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019555.2 Cucumis melo HOM05D000333 ORTHO05D000190 4.7e-51 204.1 96 100.0
CsaV3_3G018110 Cucumis sativus L. HOM05D000333 ORTHO05D000190 8.8e-50 199.9 96 97.9
ClCG05G010390 Citrullus lanatus HOM05D000333 ORTHO05D000190 4.9e-40 167.5 101 85.1
Sed0013369 Sechium edule HOM05D000333 ORTHO05D000190 1.3e-37 159.5 96 84.4
Sed0018853 Sechium edule HOM05D000333 ORTHO05D000190 5.4e-31 137.5 97 71.1
CiPaw.05G013500 Carya illinoinensis HOM05D000333 ORTHO05D000190 7.8e-22 107.1 98 58.2
Ciclev10029351m.g Citrus clementina HOM05D000333 ORTHO05D000190 7.8e-22 107.1 99 58.6
Cpa.g.sc106.117 Carica papaya HOM05D000333 ORTHO05D000190 2.3e-21 105.5 100 60.0
Manes.07G066600 Manihot esculenta HOM05D000333 ORTHO05D000190 5.1e-21 104.4 99 55.6
Dinv15775 Davidia involucrata HOM05D000333 ORTHO05D000190 1.9e-20 102.4 99 57.6
Potri.001G298700 Populus trichocarpa HOM05D000333 ORTHO05D000190 7.3e-20 100.5 99 54.5
CiPaw.06G168500 Carya illinoinensis HOM05D000333 ORTHO05D000190 9.5e-20 100.1 99 57.6
Prupe.8G137500 Prunus persica HOM05D000333 ORTHO05D000190 2.8e-19 98.6 96 55.2
RcHm_v2.0_Chr6g0254511 Rosa chinensis HOM05D000333 ORTHO05D000190 3.6e-19 98.2 96 55.2
Atru.chr5.2446 Acer truncatum HOM05D000333 ORTHO05D000190 2.3e-18 95.5 101 52.5
MD00G1108900 Malus domestica HOM05D000333 ORTHO05D000190 3.1e-18 95.1 96 53.1
QL11p032666 Quercus lobata HOM05D000333 ORTHO05D000190 4.0e-18 94.7 97 55.7
Sabra09G0071900 Salix brachista HOM05D000333 ORTHO05D000190 4.0e-18 94.7 99 53.5
Cfa004606 Carpinus fangiana HOM05D000333 ORTHO05D000190 5.2e-18 94.4 99 50.5
Dinv42205 Davidia involucrata HOM05D000333 ORTHO05D000190 6.8e-18 94.0 98 53.1
Haze_10201 Corylus avellana HOM05D000333 ORTHO05D000190 1.5e-17 92.8 99 50.5
TAR381G0005 Trochodendron aralioides HOM05D000333 ORTHO05D000190 1.5e-17 92.8 99 51.5
Actinidia34392 Actinidia chinensis HOM05D000333 ORTHO05D000190 2.0e-17 92.4 100 55.0
FvH4_2g04790 Fragaria vesca HOM05D000333 ORTHO05D000190 4.4e-17 91.3 96 52.1
FAN20G2172 Fragaria x ananassa HOM05D000333 ORTHO05D000190 4.4e-17 91.3 96 52.1
Hma1.2p1_1518F.1_g288480 Hydrangea macrophylla HOM05D000333 ORTHO05D000190 5.8e-17 90.9 99 48.5
Duzib248G1540 Durio zibethinus HOM05D000333 ORTHO05D000190 9.9e-17 90.1 98 53.1
TWI73G0397 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 9.9e-17 90.1 98 54.1
Potri.009G093300 Populus trichocarpa HOM05D000333 ORTHO05D000190 1.3e-16 89.7 99 52.5
FAN15G3092 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.7e-16 89.4 96 52.1
Lj9P325T11 Lonicera japonica HOM05D000333 ORTHO05D000190 1.7e-16 89.4 98 50.0
RcHm_v2.0_Chr6g0257541 Rosa chinensis HOM05D000333 ORTHO05D000190 1.7e-16 89.4 96 51.0
CSS0029950 Camellia sinensis var. sinensis HOM05D000333 ORTHO05D000190 2.2e-16 89.0 99 47.5
PSO170G5967 Papaver somniferum HOM05D000333 ORTHO05D000190 2.2e-16 89.0 98 52.0
PSO210G2544 Papaver somniferum HOM05D000333 ORTHO05D000190 2.2e-16 89.0 98 51.0
Lj5g0010178 Lotus japonicus HOM05D000333 ORTHO05D000190 2.9e-16 88.6 99 50.5
Gohir.A12G021200 Gossypium hirsutum HOM05D000333 ORTHO05D000190 3.7e-16 88.2 88 54.5
Gohir.D13G043500 Gossypium hirsutum HOM05D000333 ORTHO05D000190 3.7e-16 88.2 98 51.0
Gorai.013G048300 Gossypium raimondii HOM05D000333 ORTHO05D000190 3.7e-16 88.2 98 51.0
Lj5P215T36 Lonicera japonica HOM05D000333 ORTHO05D000190 3.7e-16 88.2 97 51.5
Duzib132G0452 Durio zibethinus HOM05D000333 ORTHO05D000190 4.9e-16 87.8 98 52.0
MSTRG.16707 Avicennia marina HOM05D000333 ORTHO05D000190 8.3e-16 87.0 98 50.0
Gohir.D12G021500 Gossypium hirsutum HOM05D000333 ORTHO05D000190 8.3e-16 87.0 90 53.3
Lalb_Chr21g0308251 Lupinus albus HOM05D000333 ORTHO05D000190 8.3e-16 87.0 95 48.4
CSS0010232 Camellia sinensis var. sinensis HOM05D000333 ORTHO05D000190 1.1e-15 86.7 99 46.5
COL.COLO4_32571 Corchorus olitorius HOM05D000333 ORTHO05D000190 1.1e-15 86.7 101 51.5
FAN27G2018 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.1e-15 86.7 96 50.0
Gohir.A13G044400 Gossypium hirsutum HOM05D000333 ORTHO05D000190 1.4e-15 86.3 103 50.5
Gorai.008G021800 Gossypium raimondii HOM05D000333 ORTHO05D000190 1.4e-15 86.3 88 53.4
Thecc.01G065800 Theobroma cacao HOM05D000333 ORTHO05D000190 1.4e-15 86.3 100 51.0
COL.COLO4_11507 Corchorus olitorius HOM05D000333 ORTHO05D000190 2.4e-15 85.5 99 51.5
CANSAT25G2548 Cannabis sativa HOM05D000333 ORTHO05D000190 3.2e-15 85.1 107 48.6
Manes.12G109100 Manihot esculenta HOM05D000333 ORTHO05D000190 4.1e-15 84.7 97 49.5
Sabra16G0187300 Salix brachista HOM05D000333 ORTHO05D000190 5.4e-15 84.3 95 50.5
Dinv30050 Davidia involucrata HOM05D000333 ORTHO05D000190 7.1e-15 84.0 92 51.1
TAR376G0179 Trochodendron aralioides HOM05D000333 ORTHO05D000190 7.1e-15 84.0 99 51.5
Duzib264G0003 Durio zibethinus HOM05D000333 ORTHO05D000190 1.6e-14 82.8 99 49.5
Medtr1g107055 Medicago truncatula HOM05D000333 ORTHO05D000190 2.7e-14 82.0 98 49.0
Phvul.007G041600 Phaseolus vulgaris HOM05D000333 ORTHO05D000190 2.7e-14 82.0 98 45.9
Thecc.02G111400 Theobroma cacao HOM05D000333 ORTHO05D000190 2.7e-14 82.0 98 52.0
Ca_11059_v3 Cicer arietinum L. HOM05D000333 ORTHO05D000190 3.5e-14 81.6 98 48.0
Duzib147G0395 Durio zibethinus HOM05D000333 ORTHO05D000190 4.6e-14 81.3 99 47.5
TWI09G1331 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 4.6e-14 81.3 99 48.5
CSS0048317 Camellia sinensis var. sinensis HOM05D000333 ORTHO05D000190 6.0e-14 80.9 99 48.5
VMungo0720G0031 Vigna mungo HOM05D000333 ORTHO05D000190 6.0e-14 80.9 98 49.0
CSS0012293 Camellia sinensis var. sinensis HOM05D000333 ORTHO05D000190 1.3e-13 79.7 102 48.0
CANSAT25G1246 Cannabis sativa HOM05D000333 ORTHO05D000190 1.3e-13 79.7 107 47.7
Lalb_Chr02g0145221 Lupinus albus HOM05D000333 ORTHO05D000190 1.3e-13 79.7 95 46.3
FAN24G3583 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.7e-13 79.3 78 48.7
CSS0014574 Camellia sinensis var. sinensis HOM05D000333 ORTHO05D000190 3.9e-13 78.2 99 47.5
MBI16_g04051_MAGBIO Magnolia biondii HOM05D000333 ORTHO05D000190 5.1e-13 77.8 102 47.1
AUR62039054 Chenopodium quinoa HOM05D000333 ORTHO05D000190 8.6e-13 77.0 99 45.5
Dinv26883 Davidia involucrata HOM05D000333 ORTHO05D000190 1.1e-12 76.6 86 52.3
Lju743C1T0 Lonicera japonica HOM05D000333 ORTHO05D000190 1.9e-12 75.9 71 53.5
TWI53G1327 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 1.9e-12 75.9 102 44.1
AUR62010331 Chenopodium quinoa HOM05D000333 ORTHO05D000190 2.5e-12 75.5 99 45.5
Oeu013761.1 Olea europaea HOM05D000333 ORTHO05D000190 2.5e-12 75.5 97 46.4
Actinidia16452 Actinidia chinensis HOM05D000333 ORTHO05D000190 3.3e-12 75.1 86 52.3
TAR625G1434 Trochodendron aralioides HOM05D000333 ORTHO05D000190 3.3e-12 75.1 99 44.4
Duzib187G1703 Durio zibethinus HOM05D000333 ORTHO05D000190 4.3e-12 74.7 98 48.0
Glyma.10G260600 Glycine max HOM05D000333 ORTHO05D000190 4.3e-12 74.7 98 44.9
Lj4P638T12 Lonicera japonica HOM05D000333 ORTHO05D000190 4.3e-12 74.7 67 56.7
GSVIVG01009401001 Vitis vinifera HOM05D000333 ORTHO05D000190 4.3e-12 74.7 99 46.5
Actinidia03816 Actinidia chinensis HOM05D000333 ORTHO05D000190 5.6e-12 74.3 86 54.7
VMungo0251G0707 Vigna mungo HOM05D000333 ORTHO05D000190 5.6e-12 74.3 86 51.2
Lj2P681T6 Lonicera japonica HOM05D000333 ORTHO05D000190 7.3e-12 73.9 71 52.1
Nn5g30460 Nelumbo nucifera HOM05D000333 ORTHO05D000190 7.3e-12 73.9 101 46.5
Migut.B00401 Erythranthe guttata HOM05D000333 ORTHO05D000190 9.6e-12 73.6 98 44.9
Glyma.05G100900 Glycine max HOM05D000333 ORTHO05D000190 9.6e-12 73.6 102 46.1
Nitab4.5_0001480g0120 Nicotiana tabacum HOM05D000333 ORTHO05D000190 9.6e-12 73.6 98 42.9
Aqoxy5G01131 Aquilegia oxysepala HOM05D000333 ORTHO05D000190 1.2e-11 73.2 100 47.0
Nitab4.5_0003699g0010 Nicotiana tabacum HOM05D000333 ORTHO05D000190 1.2e-11 73.2 98 42.9
SalBow6G3648 Salvia bowleyana HOM05D000333 ORTHO05D000190 1.2e-11 73.2 97 47.4
SalBow6G4086 Salvia bowleyana HOM05D000333 ORTHO05D000190 1.2e-11 73.2 97 47.4
MD15G1290700 Malus domestica HOM05D000333 ORTHO05D000190 1.6e-11 72.8 102 48.0
Psat6g216640 Pisum sativum HOM05D000333 ORTHO05D000190 2.1e-11 72.4 98 44.9
Prupe.6G226200 Prunus persica HOM05D000333 ORTHO05D000190 2.1e-11 72.4 101 45.5
Solyc01g107430.2 Solanum lycopersicum HOM05D000333 ORTHO05D000190 2.1e-11 72.4 98 41.8
Sopen01g049680 Solanum pennellii HOM05D000333 ORTHO05D000190 2.1e-11 72.4 98 41.8
CAN.G606.20 Capsicum annuum HOM05D000333 ORTHO05D000190 2.8e-11 72.0 98 41.8
Glyma.17G165600 Glycine max HOM05D000333 ORTHO05D000190 4.7e-11 71.2 90 48.9
Oeu029534.1 Olea europaea HOM05D000333 ORTHO05D000190 6.2e-11 70.9 97 43.3
PGR142G3179 Punica granatum HOM05D000333 ORTHO05D000190 6.2e-11 70.9 126 38.9
PGSC0003DMG400023267 Solanum tuberosum HOM05D000333 ORTHO05D000190 6.2e-11 70.9 98 41.8
PGSC0003DMG400025858 Solanum tuberosum HOM05D000333 ORTHO05D000190 8.1e-11 70.5 98 39.8
unitig_21.g20729 Utricularia gibba HOM05D000333 ORTHO05D000190 8.1e-11 70.5 99 42.4
Sopen10g019900 Solanum pennellii HOM05D000333 ORTHO05D000190 1.1e-10 70.1 98 40.8
TPR.G19084 Trifolium pratense HOM05D000333 ORTHO05D000190 1.1e-10 70.1 99 47.5
Sc18g0005560 Simmondsia chinensis HOM05D000333 ORTHO05D000190 1.4e-10 69.7 99 43.4
Solyc10g049870.1 Solanum lycopersicum HOM05D000333 ORTHO05D000190 1.4e-10 69.7 98 40.8
EL10Ac9g22253 Beta vulgaris HOM05D000333 ORTHO05D000190 1.8e-10 69.3 99 45.5
COL.COLO4_28568 Corchorus olitorius HOM05D000333 ORTHO05D000190 3.1e-10 68.6 99 42.4
Glyma.20G130600 Glycine max HOM05D000333 ORTHO05D000190 4.0e-10 68.2 101 43.6
Cfa004079 Carpinus fangiana HOM05D000333 ORTHO05D000190 5.2e-10 67.8 98 46.9
Haze_15334 Corylus avellana HOM05D000333 ORTHO05D000190 5.2e-10 67.8 98 45.9
Atru.chr13.782 Acer truncatum HOM05D000333 ORTHO05D000190 6.8e-10 67.4 96 41.7
MD02G1180000 Malus domestica HOM05D000333 ORTHO05D000190 6.8e-10 67.4 102 45.1
Nn1g04656 Nelumbo nucifera HOM05D000333 ORTHO05D000190 6.8e-10 67.4 85 50.6
Peaxi162Scf00003g00253 Petunia axillaris HOM05D000333 ORTHO05D000190 8.9e-10 67.0 98 38.8
CiPaw.01G009300 Carya illinoinensis HOM05D000333 ORTHO05D000190 1.2e-09 66.6 102 44.1
FAN28G1164 Fragaria x ananassa HOM05D000333 ORTHO05D000190 2.6e-09 65.5 102 40.2
FvH4_1g16970 Fragaria vesca HOM05D000333 ORTHO05D000190 3.4e-09 65.1 102 40.2
FAN19G1611 Fragaria x ananassa HOM05D000333 ORTHO05D000190 3.4e-09 65.1 102 40.2
Lalb_Chr06g0165331 Lupinus albus HOM05D000333 ORTHO05D000190 3.4e-09 65.1 95 37.9
Manes.13G116300 Manihot esculenta HOM05D000333 ORTHO05D000190 3.4e-09 65.1 99 43.4
Glyma.05G063200 Glycine max HOM05D000333 ORTHO05D000190 4.4e-09 64.7 98 42.9
RcHm_v2.0_Chr2g0107071 Rosa chinensis HOM05D000333 ORTHO05D000190 7.6e-09 63.9 100 41.0
FAN26G2068 Fragaria x ananassa HOM05D000333 ORTHO05D000190 9.9e-09 63.5 102 39.2
Peaxi162Scf00016g00251 Petunia axillaris HOM05D000333 ORTHO05D000190 9.9e-09 63.5 96 38.5
Lalb_Chr16g0388821 Lupinus albus HOM05D000333 ORTHO05D000190 1.7e-08 62.8 87 46.0
Ca_13938_v3 Cicer arietinum L. HOM05D000333 ORTHO05D000190 2.2e-08 62.4 82 48.8
SGA_v2.0_scaffold225G42994 Striga asiatica HOM05D000333 ORTHO05D000190 2.2e-08 62.4 96 41.7
Cpa.g.sc6.75 Carica papaya HOM05D000333 ORTHO05D000190 2.9e-08 62.0 89 44.9
Cc02_g19420 Coffea canephora HOM05D000333 ORTHO05D000190 2.9e-08 62.0 96 40.6
Thecc.08G094500 Theobroma cacao HOM05D000333 ORTHO05D000190 3.8e-08 61.6 99 43.4
Lj4g0022923 Lotus japonicus HOM05D000333 ORTHO05D000190 1.1e-07 60.1 86 47.7
TPR.G23866 Trifolium pratense HOM05D000333 ORTHO05D000190 1.4e-07 59.7 93 46.2
DCAR_001660 Daucus carota HOM05D000333 ORTHO05D000190 1.9e-07 59.3 98 42.9
Potri.005G144500 Populus trichocarpa HOM05D000333 ORTHO05D000190 1.9e-07 59.3 100 40.0
Phvul.003G238800 Phaseolus vulgaris HOM05D000333 ORTHO05D000190 2.4e-07 58.9 88 46.6
Hma1.2p1_0239F.1_g099940 Hydrangea macrophylla HOM05D000333 ORTHO05D000190 3.2e-07 58.5 88 47.7
Nitab4.5_0002647g0030 Nicotiana tabacum HOM05D000333 ORTHO05D000190 3.2e-07 58.5 73 41.1
Rhsim08G0097300 Rhododendron simsii HOM05D000333 ORTHO05D000190 4.2e-07 58.2 87 48.3
ClCG02G006550 Citrullus lanatus HOM05D000333 ORTHO05D000190 7.1e-07 57.4 109 42.2
EL10Ac6g15679 Beta vulgaris HOM05D000333 ORTHO05D000190 9.3e-07 57.0 103 37.9
Nitab4.5_0001259g0040 Nicotiana tabacum HOM05D000333 ORTHO05D000190 9.3e-07 57.0 65 44.6
Gorai.009G216700 Gossypium raimondii HOM05D000333 ORTHO05D000190 1.6e-06 56.2 99 36.4
unitig_61.g26023 Utricularia gibba HOM05D000333 ORTHO05D000190 2.1e-06 55.8 88 39.8
Gohir.A05G206800 Gossypium hirsutum HOM05D000333 ORTHO05D000190 2.7e-06 55.5 99 35.4
Atru.chr3.234 Acer truncatum HOM05D000333 ORTHO05D000190 3.5e-06 55.1 97 41.2
CANSAT01G1798 Cannabis sativa HOM05D000333 ORTHO05D000190 3.5e-06 55.1 98 37.8
COL.COLO4_27598 Corchorus olitorius HOM05D000333 ORTHO05D000190 3.5e-06 55.1 81 40.7
Atru.chr3.223 Acer truncatum HOM05D000333 ORTHO05D000190 4.6e-06 54.7 113 38.1
Aqoxy1G03865 Aquilegia oxysepala HOM05D000333 ORTHO05D000190 7.8e-06 53.9 84 45.2
Lalb_Chr05g0226111 Lupinus albus HOM05D000333 ORTHO05D000190 7.8e-06 53.9 90 41.1


User provided reference genes

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