Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019553.2 Cucumis melo HOM05D003511 ORTHO05D004403 0.0e+00 1293.5 636 100.0
CsaV3_3G018140 Cucumis sativus L. HOM05D003511 ORTHO05D004403 0.0e+00 1250.7 632 96.8
ClCG05G010350 Citrullus lanatus HOM05D003511 ORTHO05D004403 0.0e+00 1229.5 632 94.9
Sed0023024 Sechium edule HOM05D003511 ORTHO05D004403 0.0e+00 1124.4 634 87.2
Dinv15773 Davidia involucrata HOM05D003511 ORTHO05D004403 7.4e-278 960.3 615 75.9
RcHm_v2.0_Chr6g0254541 Rosa chinensis HOM05D003511 ORTHO05D004403 2.7e-272 941.8 615 73.8
Dinv42203 Davidia involucrata HOM05D003511 ORTHO05D004403 3.6e-272 941.4 614 74.6
Gorai.008G022200 Gossypium raimondii HOM05D003511 ORTHO05D004403 6.1e-272 940.6 616 74.7
CiPaw.05G013100 Carya illinoinensis HOM05D003511 ORTHO05D004403 1.4e-271 939.5 616 74.2
Gohir.D12G021900 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.8e-271 939.1 616 74.7
FvH4_2g04810 Fragaria vesca HOM05D003511 ORTHO05D004403 2.0e-270 935.6 615 73.3
FAN15G2851 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.5e-270 935.3 615 73.5
Duzib052G0193 Durio zibethinus HOM05D003511 ORTHO05D004403 3.3e-270 934.9 616 74.0
FAN27G0709 Fragaria x ananassa HOM05D003511 ORTHO05D004403 3.3e-270 934.9 615 73.7
QL11p032729 Quercus lobata HOM05D003511 ORTHO05D004403 4.3e-270 934.5 615 74.6
Gohir.A12G021400 Gossypium hirsutum HOM05D003511 ORTHO05D004403 9.7e-270 933.3 616 74.0
Atru.chr5.2456 Acer truncatum HOM05D003511 ORTHO05D004403 6.3e-269 930.6 617 73.6
Lj5C215T12 Lonicera japonica HOM05D003511 ORTHO05D004403 1.2e-267 926.4 605 74.5
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 1.0e-266 923.3 617 72.6
MD10G1099400 Malus domestica HOM05D003511 ORTHO05D004403 1.7e-266 922.5 615 73.3
Duzib132G0449 Durio zibethinus HOM05D003511 ORTHO05D004403 1.1e-265 919.8 616 73.2
Manes.10G075800 Manihot esculenta HOM05D003511 ORTHO05D004403 5.5e-265 917.5 620 71.6
CSS0033371 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.0e-263 913.3 614 73.1
Sed0017826 Sechium edule HOM05D003511 ORTHO05D004403 1.4e-263 912.9 495 89.5
Thecc.02G110900 Theobroma cacao HOM05D003511 ORTHO05D004403 3.0e-263 911.8 616 72.9
Potri.009G093900 Populus trichocarpa HOM05D003511 ORTHO05D004403 3.9e-263 911.4 602 72.9
Ciclev10027816m.g Citrus clementina HOM05D003511 ORTHO05D004403 8.8e-263 910.2 613 72.3
Cpa.g.sc106.113 Carica papaya HOM05D003511 ORTHO05D004403 1.1e-262 909.8 616 72.6
Actinidia34394 Actinidia chinensis HOM05D003511 ORTHO05D004403 1.5e-262 909.4 616 71.1
COL.COLO4_32574 Corchorus olitorius HOM05D003511 ORTHO05D004403 5.7e-262 907.5 602 73.6
Hma1.2p1_1518F.1_g288460 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 1.7e-261 906.0 604 72.7
FAN24G0829 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.8e-261 905.2 653 68.8
Cfa004604 Carpinus fangiana HOM05D003511 ORTHO05D004403 2.4e-260 902.1 615 69.4
MD10G1099200 Malus domestica HOM05D003511 ORTHO05D004403 1.3e-258 896.3 613 71.8
Eucgr.I01093 Eucalyptus grandis HOM05D003511 ORTHO05D004403 2.9e-258 895.2 616 72.1
vmacro01992 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 2.9e-258 895.2 616 70.0
CANSAT25G1711 Cannabis sativa HOM05D003511 ORTHO05D004403 4.2e-257 891.3 601 72.2
Hma1.2p1_1518F.1_g288470 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 9.4e-257 890.2 602 71.4
DCAR_001655 Daucus carota HOM05D003511 ORTHO05D004403 1.4e-255 886.3 609 69.5
FvH4_2g04870 Fragaria vesca HOM05D003511 ORTHO05D004403 3.0e-255 885.2 662 67.8
Glyma.20G130366 Glycine max HOM05D003511 ORTHO05D004403 3.0e-255 885.2 616 70.9
Glyma.10G260900 Glycine max HOM05D003511 ORTHO05D004403 5.2e-255 884.4 617 70.3
TWI79G1106 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 6.7e-255 884.0 616 70.0
Potri.001G299000 Populus trichocarpa HOM05D003511 ORTHO05D004403 7.5e-254 880.6 617 69.4
Glyma.20G130432 Glycine max HOM05D003511 ORTHO05D004403 9.7e-254 880.2 616 69.8
Lj5g0008514 Lotus japonicus HOM05D003511 ORTHO05D004403 9.7e-254 880.2 618 70.1
Psat6g217200 Pisum sativum HOM05D003511 ORTHO05D004403 9.7e-254 880.2 609 70.3
FAN24G2294 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.8e-253 878.6 662 67.4
Nn5g30453 Nelumbo nucifera HOM05D003511 ORTHO05D004403 3.7e-253 878.2 615 68.3
Atru.chr5.2453 Acer truncatum HOM05D003511 ORTHO05D004403 1.1e-252 876.7 603 71.5
CiPaw.05G013200 Carya illinoinensis HOM05D003511 ORTHO05D004403 2.4e-252 875.5 615 68.8
Aqoxy6G02835 Aquilegia oxysepala HOM05D003511 ORTHO05D004403 3.1e-252 875.2 617 69.2
QL11p032687 Quercus lobata HOM05D003511 ORTHO05D004403 5.3e-252 874.4 600 69.5
Phvul.007G041400 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 9.1e-252 873.6 615 69.4
Sabra09G0072200 Salix brachista HOM05D003511 ORTHO05D004403 3.5e-251 871.7 622 68.5
Haze_10199 Corylus avellana HOM05D003511 ORTHO05D004403 7.7e-251 870.5 615 67.8
Medtr1g107135 Medicago truncatula HOM05D003511 ORTHO05D004403 3.8e-250 868.2 618 68.1
vmacro02524 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 1.5e-249 866.3 616 67.5
PGR142G1515 Punica granatum HOM05D003511 ORTHO05D004403 1.9e-249 865.9 607 70.3
VMungo0720G0159 Vigna mungo HOM05D003511 ORTHO05D004403 1.9e-249 865.9 616 69.5
PSO541G1166 Papaver somniferum HOM05D003511 ORTHO05D004403 7.2e-249 864.0 602 71.1
Thecc.02G111000 Theobroma cacao HOM05D003511 ORTHO05D004403 1.6e-248 862.8 589 70.6
Lalb_Chr06g0165351 Lupinus albus HOM05D003511 ORTHO05D004403 2.1e-248 862.4 687 63.9
Cfa004603 Carpinus fangiana HOM05D003511 ORTHO05D004403 3.6e-248 861.7 617 70.7
Manes.07G068400 Manihot esculenta HOM05D003511 ORTHO05D004403 1.4e-247 859.8 604 68.9
Ciclev10027838m.g Citrus clementina HOM05D003511 ORTHO05D004403 1.8e-247 859.4 589 69.8
HanXRQChr09g0251071 Helianthus annuus HOM05D003511 ORTHO05D004403 3.0e-247 858.6 607 69.5
Manes.10G075700 Manihot esculenta HOM05D003511 ORTHO05D004403 6.8e-247 857.4 596 70.0
Ca_11061_v3 Cicer arietinum L. HOM05D003511 ORTHO05D004403 8.8e-247 857.1 607 67.7
Gorai.008G022000 Gossypium raimondii HOM05D003511 ORTHO05D004403 2.6e-246 855.5 600 69.0
Potri.009G093500 Populus trichocarpa HOM05D003511 ORTHO05D004403 7.5e-246 854.0 613 67.2
TAR381G0463 Trochodendron aralioides HOM05D003511 ORTHO05D004403 9.8e-246 853.6 573 72.3
Gohir.D12G021700 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.7e-245 852.8 599 68.4
COL.COLO4_32573 Corchorus olitorius HOM05D003511 ORTHO05D004403 3.7e-245 851.7 604 68.5
Duzib248G0534 Durio zibethinus HOM05D003511 ORTHO05D004403 3.7e-245 851.7 604 68.5
FAN20G1862 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.8e-244 849.4 615 68.6
Lsat_1_v5_gn_9_111920 Lactuca sativa HOM05D003511 ORTHO05D004403 4.1e-244 848.2 609 68.6
Nitab4.5_0003699g0020 Nicotiana tabacum HOM05D003511 ORTHO05D004403 4.1e-244 848.2 603 67.5
Sc08g0001330 Simmondsia chinensis HOM05D003511 ORTHO05D004403 1.2e-243 846.7 616 67.4
Nitab4.5_0001480g0130 Nicotiana tabacum HOM05D003511 ORTHO05D004403 1.6e-243 846.3 603 67.5
Sabra09G0072100 Salix brachista HOM05D003511 ORTHO05D004403 2.0e-243 845.9 616 66.6
ECA240G1815 Erigeron canadensis HOM05D003511 ORTHO05D004403 2.7e-243 845.5 577 70.5
THA.LOC104819550 Tarenaya hassleriana HOM05D003511 ORTHO05D004403 1.0e-242 843.6 611 67.3
TPR.G19061 Trifolium pratense HOM05D003511 ORTHO05D004403 1.9e-241 839.3 627 65.9
Cc02_g19400 Coffea canephora HOM05D003511 ORTHO05D004403 2.5e-241 839.0 612 66.5
Sabra16G0187700 Salix brachista HOM05D003511 ORTHO05D004403 5.5e-241 837.8 687 61.9
DCAR_001656 Daucus carota HOM05D003511 ORTHO05D004403 6.1e-240 834.3 607 66.4
Thhalv10024398m.g Eutrema salsugineum HOM05D003511 ORTHO05D004403 8.0e-240 833.9 635 64.6
AUR62039058 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.8e-239 832.8 636 65.6
MSTRG.20193 Avicennia marina HOM05D003511 ORTHO05D004403 2.3e-239 832.4 648 63.4
ATR0205G005 Amborella trichopoda HOM05D003511 ORTHO05D004403 3.4e-238 828.6 625 64.2
AUR62010328 Chenopodium quinoa HOM05D003511 ORTHO05D004403 9.8e-238 827.0 581 69.4
Eucgr.I01092 Eucalyptus grandis HOM05D003511 ORTHO05D004403 9.8e-238 827.0 608 65.5
Sp7g32040 Schrenkiella parvula HOM05D003511 ORTHO05D004403 9.8e-238 827.0 629 65.7
arahy.Tifrunner.gnm1.ann1.VN0KJM Arachis hypogaea HOM05D003511 ORTHO05D004403 8.3e-237 823.9 584 69.3
Carub.0007s0611 Capsella rubella HOM05D003511 ORTHO05D004403 8.3e-237 823.9 630 64.9
Migut.B00398 Erythranthe guttata HOM05D003511 ORTHO05D004403 8.3e-237 823.9 636 64.5
Aa31LG2G16810 Aethionema arabicum HOM05D003511 ORTHO05D004403 3.1e-236 822.0 632 63.9
Medtr4g127370 Medicago truncatula HOM05D003511 ORTHO05D004403 9.2e-236 820.5 616 65.6
BcaNung04164 Brassica carinata HOM05D003511 ORTHO05D004403 2.0e-235 819.3 631 63.7
AT4G34260 Arabidopsis thaliana HOM05D003511 ORTHO05D004403 5.9e-235 817.8 632 64.1
FAN15G0970 Fragaria x ananassa HOM05D003511 ORTHO05D004403 5.9e-235 817.8 615 67.5
Rhsim10G0162400 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.0e-234 817.0 714 58.7
arahy.Tifrunner.gnm1.ann1.LFSR1E Arachis hypogaea HOM05D003511 ORTHO05D004403 5.0e-234 814.7 614 66.6
C01p04540 Brassica napus HOM05D003511 ORTHO05D004403 6.6e-234 814.3 602 65.8
BolC1t00439H Brassica oleracea HOM05D003511 ORTHO05D004403 6.6e-234 814.3 602 65.8
CARHR242530 Cardamine hirsuta HOM05D003511 ORTHO05D004403 6.6e-234 814.3 626 64.5
Potri.001G298900 Populus trichocarpa HOM05D003511 ORTHO05D004403 1.5e-233 813.1 613 65.1
Hund00157 Selenicereus undatus HOM05D003511 ORTHO05D004403 1.5e-233 813.1 636 63.4
Rhsim11G0156500 Rhododendron simsii HOM05D003511 ORTHO05D004403 4.3e-233 811.6 616 64.9
Rhsim11G0158000 Rhododendron simsii HOM05D003511 ORTHO05D004403 4.3e-233 811.6 616 64.9
BcaNung04986 Brassica carinata HOM05D003511 ORTHO05D004403 5.6e-233 811.2 602 65.6
Hund06308 Selenicereus undatus HOM05D003511 ORTHO05D004403 1.2e-232 810.1 598 65.9
DCAR_029092 Daucus carota HOM05D003511 ORTHO05D004403 3.6e-232 808.5 612 64.7
EL10Ac9g22257 Beta vulgaris HOM05D003511 ORTHO05D004403 1.8e-231 806.2 591 66.8
A01p04170 Brassica napus HOM05D003511 ORTHO05D004403 1.8e-231 806.2 630 63.8
AL7G17030 Arabidopsis lyrata HOM05D003511 ORTHO05D004403 4.0e-231 805.1 631 63.4
BraA01t00406Z Brassica rapa HOM05D003511 ORTHO05D004403 6.8e-231 804.3 630 63.7
ATR0661G369 Amborella trichopoda HOM05D003511 ORTHO05D004403 1.2e-230 803.5 625 62.6
PGR142G0041 Punica granatum HOM05D003511 ORTHO05D004403 4.4e-230 801.6 609 65.2
AUR62039057 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.7e-229 799.7 604 66.4
Oeu029532.2 Olea europaea HOM05D003511 ORTHO05D004403 2.2e-229 799.3 632 63.9
Eucgr.I01091 Eucalyptus grandis HOM05D003511 ORTHO05D004403 2.9e-229 798.9 606 64.0
CDE06G2550 Ceratophyllum demersum HOM05D003511 ORTHO05D004403 3.2e-228 795.4 636 62.4
Lsat_1_v5_gn_5_116360 Lactuca sativa HOM05D003511 ORTHO05D004403 2.0e-227 792.7 590 64.9
ECA234G0109 Erigeron canadensis HOM05D003511 ORTHO05D004403 5.6e-225 784.6 587 64.7
GSVIVG01037900001 Vitis vinifera HOM05D003511 ORTHO05D004403 5.6e-225 784.6 642 63.2
TWI75G1477 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 5.8e-222 774.6 612 62.9
HanXRQChr10g0296941 Helianthus annuus HOM05D003511 ORTHO05D004403 2.2e-221 772.7 587 64.1
Glyma.01G243600 Glycine max HOM05D003511 ORTHO05D004403 1.9e-220 769.6 602 63.5
Ah.01g010970 Amaranthus hybridus HOM05D003511 ORTHO05D004403 1.6e-219 766.5 560 66.2
Prupe.8G137300 Prunus persica HOM05D003511 ORTHO05D004403 3.5e-219 765.4 511 72.8
TPR.G19062 Trifolium pratense HOM05D003511 ORTHO05D004403 7.8e-219 764.2 571 65.3
VMungo1215G0806 Vigna mungo HOM05D003511 ORTHO05D004403 2.8e-216 755.7 605 62.1
Phvul.002G053000 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 3.6e-216 755.4 607 62.1
AUR62010329 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.5e-214 750.0 604 62.9
Gohir.A12G021350 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.4e-212 743.4 599 61.9
Os10g0339600 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 4.7e-200 701.8 614 56.2
Lj5C215G13 Lonicera japonica HOM05D003511 ORTHO05D004403 2.0e-198 696.4 609 60.3
HPP92_006064 Vanilla planifolia HOM05D003511 ORTHO05D004403 2.6e-198 696.0 567 60.3
Os10g0339290 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 2.1e-195 686.4 586 57.2
Oeu013759.1 Olea europaea HOM05D003511 ORTHO05D004403 1.0e-194 684.1 634 56.3
Zm00001eb027590 Zea mays HOM05D003511 ORTHO05D004403 4.3e-193 678.7 614 56.0
MBI16_g16349_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 2.4e-191 672.9 526 63.5
MBI16_g33969_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 2.4e-191 672.9 526 62.9
Rhsim10G0162100 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.9e-188 663.3 637 55.9
SMO116G0225 Selaginella moellendorffii HOM05D003511 ORTHO05D004403 8.1e-176 621.3 589 51.8
Lj5A215G58 Lonicera japonica HOM05D003511 ORTHO05D004403 3.5e-171 605.9 592 54.9
Pp3c19_10350 Physcomitrium patens HOM05D003511 ORTHO05D004403 1.5e-166 590.5 640 47.2
Peaxi162Scf00016g02427 Petunia axillaris HOM05D003511 ORTHO05D004403 1.4e-159 567.4 493 58.4
Mapoly0115s0027 Marchantia polymorpha HOM05D003511 ORTHO05D004403 1.3e-157 560.8 631 43.9
CSS0038772 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 4.8e-128 462.6 352 68.2
SalBow6G6056 Salvia bowleyana HOM05D003511 ORTHO05D004403 1.4e-127 461.1 285 77.2
RcHm_v2.0_Chr6g0254581 Rosa chinensis HOM05D003511 ORTHO05D004403 1.0e-114 418.3 303 70.0
SEGI_03881 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 1.2e-113 414.8 399 51.9
Lsat_1_v5_gn_5_116340 Lactuca sativa HOM05D003511 ORTHO05D004403 3.7e-104 383.3 339 57.8
Sabra16G0187500 Salix brachista HOM05D003511 ORTHO05D004403 1.1e-90 338.6 210 71.9
CSS0035504 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 7.8e-78 295.8 163 81.0
CSS0003612 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 3.9e-77 293.5 163 79.8
CSS0042293 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 3.9e-77 293.5 163 79.8
CSS0009203 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 4.3e-76 290.0 216 68.5
CSS0016029 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 4.3e-76 290.0 216 68.5
SEGI_08298 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 4.6e-62 243.4 278 47.1
SEGI_38974 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 5.1e-61 240.0 163 63.8
Peaxi162Scf00152g00326 Petunia axillaris HOM05D003511 ORTHO05D004403 2.0e-57 228.0 128 78.1
Oeu042151.1 Olea europaea HOM05D003511 ORTHO05D004403 4.5e-57 226.9 152 72.4
AagrBONN_evm.TU.Sc2ySwM_344.4246 Anthoceros agrestis HOM05D003511 ORTHO05D004403 7.6e-49 199.5 353 34.6
MBI16_g09476_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 5.0e-40 170.2 110 68.2
Glyma.10G260750 Glycine max HOM05D003511 ORTHO05D004403 8.2e-35 152.9 109 67.0
Atru.chr5.2448 Acer truncatum HOM05D003511 ORTHO05D004403 2.4e-34 151.4 87 74.7
AagrBONN_evm.TU.Sc2ySwM_344.4259 Anthoceros agrestis HOM05D003511 ORTHO05D004403 5.3e-34 150.2 148 48.6
SEGI_24031 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 1.2e-30 139.0 109 57.8
CSS0034894 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 6.7e-29 133.3 90 67.8
AagrBONN_evm.TU.Sc2ySwM_344.4245 Anthoceros agrestis HOM05D003511 ORTHO05D004403 2.0e-28 131.7 137 46.0
SEGI_08198 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 3.1e-26 124.4 104 53.8
TPR.G13230 Trifolium pratense HOM05D003511 ORTHO05D004403 2.5e-23 114.8 79 70.9
Lsat_1_v5_gn_2_5441 Lactuca sativa HOM05D003511 ORTHO05D229135 4.1e-18 97.4 157 41.4
Glyma.04G111966 Glycine max HOM05D003511 ORTHO05D004403 3.5e-17 94.4 41 90.2
TPR.G4920 Trifolium pratense HOM05D000048 ORTHO05D000207 2.9e-16 91.3 64 71.9
Lj5A215G56 Lonicera japonica HOM05D003511 ORTHO05D004403 2.7e-14 84.7 62 56.5
Medtr1g107145 Medicago truncatula HOM05D003511 ORTHO05D004403 1.1e-10 72.8 55 61.8
SEGI_37563 Sequoiadendron giganteum HOM05D003511 ORTHO05D385140 1.5e-07 62.4 65 49.2
DCAR_001658 Daucus carota HOM05D003511 ORTHO05D175251 1.9e-07 62.0 47 59.6


User provided reference genes

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