Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 0.0e+00 1440.2 736 100.0
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 4.4e-266 921.4 741 71.7
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 5.4e-256 887.9 741 68.4
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 2.5e-221 772.7 752 61.3
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 2.1e-220 769.6 748 61.0
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 2.1e-220 769.6 743 59.9
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 5.3e-219 765.0 741 59.9
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 2.6e-218 762.7 739 60.6
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 4.5e-218 761.9 746 59.4
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.0e-217 760.8 736 59.1
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 1.0e-217 760.8 764 59.4
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 2.9e-217 759.2 735 58.9
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 3.8e-217 758.8 738 61.0
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 3.8e-217 758.8 743 60.0
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 6.5e-217 758.1 738 61.0
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 6.5e-217 758.1 748 59.2
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 1.9e-216 756.5 741 59.4
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 3.2e-216 755.7 746 59.8
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 4.2e-216 755.4 741 60.2
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 5.5e-216 755.0 731 59.5
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 7.1e-216 754.6 743 59.0
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 9.3e-216 754.2 729 61.0
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.2e-215 753.8 741 59.1
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 2.1e-215 753.1 739 60.2
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 3.5e-215 752.3 738 59.5
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 6.0e-215 751.5 736 58.6
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.0e-214 750.7 761 58.6
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.0e-214 750.7 741 59.1
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.3e-214 750.4 738 60.3
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 2.3e-214 749.6 742 59.4
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 3.9e-214 748.8 716 60.9
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 5.1e-214 748.4 742 59.3
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 6.7e-214 748.0 746 58.2
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 1.9e-213 746.5 745 58.5
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 2.5e-213 746.1 740 58.9
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 3.3e-213 745.7 738 60.0
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 3.3e-213 745.7 747 58.6
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 4.3e-213 745.3 743 59.1
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 7.4e-213 744.6 715 60.4
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 9.6e-213 744.2 743 59.1
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.3e-212 743.8 733 58.9
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 4.8e-212 741.9 741 58.7
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 6.3e-212 741.5 741 58.8
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 1.4e-211 740.3 740 58.6
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 9.0e-211 737.6 723 60.2
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 2.6e-210 736.1 754 58.4
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 4.5e-210 735.3 744 59.7
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 5.9e-210 734.9 736 57.7
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 7.6e-210 734.6 741 57.9
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 2.2e-209 733.0 731 58.7
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 2.9e-209 732.6 754 58.4
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 3.8e-209 732.3 747 58.6
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 3.8e-209 732.3 700 61.7
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 3.8e-209 732.3 695 61.4
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 5.0e-209 731.9 736 59.5
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.1e-208 730.7 736 58.2
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 1.4e-208 730.3 685 61.3
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 4.2e-208 728.8 685 60.7
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 7.2e-208 728.0 751 57.9
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 9.3e-208 727.6 751 57.4
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 1.2e-207 727.2 749 56.6
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 1.2e-207 727.2 685 60.6
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 4.6e-207 725.3 746 57.9
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 6.1e-207 724.9 724 59.8
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 7.9e-207 724.5 661 62.8
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 3.0e-206 722.6 739 57.6
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 3.9e-206 722.2 653 62.2
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 5.1e-206 721.8 739 57.4
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 5.1e-206 721.8 698 60.3
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 6.7e-206 721.5 727 58.0
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 8.7e-206 721.1 688 60.8
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 1.9e-205 719.9 742 57.5
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.5e-205 719.5 721 59.2
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 2.5e-205 719.5 646 62.4
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 3.3e-205 719.2 683 61.5
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 1.3e-204 717.2 727 57.6
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 4.8e-204 715.3 742 57.1
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 1.1e-203 714.1 742 57.1
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.4e-203 713.8 739 57.8
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 2.4e-203 713.0 736 57.2
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 3.1e-203 712.6 742 57.4
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 4.1e-203 712.2 715 58.5
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 4.1e-203 712.2 657 61.8
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 5.3e-203 711.8 688 60.5
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.2e-202 710.7 743 57.3
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 2.0e-202 709.9 716 59.6
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 1.3e-201 707.2 728 58.1
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 2.2e-201 706.4 713 58.5
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 5.0e-201 705.3 698 59.3
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 3.2e-200 702.6 699 59.1
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 2.7e-199 699.5 722 57.1
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 6.1e-199 698.4 700 58.7
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.4e-198 697.2 777 54.7
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 1.8e-198 696.8 709 58.1
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 9.7e-197 691.0 697 57.8
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 3.4e-194 682.6 678 59.1
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 1.8e-190 670.2 698 58.2
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 1.4e-187 660.6 665 57.6
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 3.1e-187 659.4 687 57.1
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 1.4e-182 644.0 652 57.7
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 2.8e-180 636.3 626 58.6
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 6.3e-180 635.2 655 55.7
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 1.4e-179 634.0 736 52.4
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 5.9e-178 628.6 594 60.8
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 5.2e-174 615.5 642 56.9
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 1.3e-172 610.9 596 59.1
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 1.4e-171 607.4 617 56.6
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 1.8e-171 607.1 640 54.4
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 3.5e-170 602.8 596 58.4
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.1e-168 597.8 595 58.5
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.5e-168 597.4 726 50.3
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 2.1e-167 593.6 679 51.4
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 9.8e-165 584.7 675 50.7
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.3e-164 584.3 716 49.0
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 8.3e-164 581.6 541 64.5
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 3.7e-156 556.2 555 59.6
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 5.9e-154 548.9 598 54.8
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 4.4e-149 532.7 564 55.5
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 8.3e-148 528.5 600 52.8
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 1.1e-147 528.1 583 54.2
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 5.4e-147 525.8 586 53.9
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 2.5e-144 516.9 565 54.9
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 4.7e-143 512.7 300 85.7
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.4e-142 511.1 548 55.1
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 5.2e-142 509.2 578 53.1
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 2.6e-141 506.9 602 52.3
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.4e-139 500.4 584 51.4
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 2.8e-135 486.9 743 44.8
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 2.5e-128 463.8 627 47.7
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.6e-127 459.9 546 52.4
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 7.6e-125 452.2 259 89.2
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 5.4e-123 446.0 270 83.0
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 5.6e-120 436.0 285 78.6
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 3.5e-114 416.8 693 42.7
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 5.1e-113 412.9 611 46.8
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 4.9e-100 369.8 287 66.9
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.4e-99 368.2 458 49.6
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.7e-92 344.7 747 33.7
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 7.9e-90 335.9 482 47.3
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 2.0e-80 304.7 305 60.0
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 4.5e-77 293.5 183 80.9
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 2.0e-69 268.1 734 32.3
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 1.7e-68 265.0 220 67.7
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 2.6e-56 224.6 139 82.0
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.7e-53 214.5 172 65.7
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 2.2e-47 194.9 126 78.6
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 1.2e-45 189.1 115 83.5
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.2e-45 189.1 142 68.3
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 2.4e-38 164.9 387 34.4
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.7e-36 158.7 102 79.4
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.9e-35 155.2 168 57.1
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 5.8e-32 143.7 94 75.5
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 9.8e-32 142.9 102 78.4
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 9.5e-27 126.3 104 66.3
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 2.3e-25 121.7 79 78.5
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 5.2e-25 120.6 69 85.5
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 8.9e-25 119.8 78 79.5
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 4.9e-23 114.0 90 62.2
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 7.1e-22 110.2 352 28.1
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 3.9e-20 104.4 70 78.6
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 5.1e-20 104.0 61 85.2
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 4.9e-15 87.4 54 81.5
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 5.1e-12 77.4 67 65.7
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 5.1e-12 77.4 141 35.5
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 5.6e-11 73.9 58 65.5
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 6.2e-10 70.5 50 68.0
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 2.0e-08 65.5 55 56.4
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 7.6e-08 63.5 50 62.0
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 2.2e-07 62.0 39 82.1


User provided reference genes

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