Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 4.7e-30 134.0 75 100.0
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 3.9e-29 131.0 75 97.3
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 4.4e-28 127.5 75 94.7
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 4.5e-25 117.5 75 86.7
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 1.1e-23 112.8 76 85.5
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 1.8e-21 105.5 75 76.0
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 3.0e-21 104.8 75 73.3
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.9e-21 104.4 75 73.3
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 3.9e-21 104.4 75 74.7
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 6.7e-21 103.6 75 73.3
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 6.7e-21 103.6 75 73.3
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 6.7e-21 103.6 75 73.3
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 8.8e-21 103.2 74 73.0
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.8e-21 103.2 75 73.3
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.8e-21 103.2 75 73.3
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 8.8e-21 103.2 75 73.3
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 1.5e-20 102.4 74 73.0
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 2.0e-20 102.1 75 74.7
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 2.0e-20 102.1 75 72.0
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 3.3e-20 101.3 75 72.0
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 4.4e-20 100.9 75 72.0
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 5.7e-20 100.5 75 70.7
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 5.7e-20 100.5 75 72.0
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 7.4e-20 100.1 75 72.0
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 9.7e-20 99.8 75 69.3
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 2.2e-19 98.6 75 69.3
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 3.7e-19 97.8 75 68.0
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 6.3e-19 97.1 75 68.0
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 8.2e-19 96.7 75 68.0
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 8.2e-19 96.7 77 68.8
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 8.2e-19 96.7 75 69.3
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 1.4e-18 95.9 75 69.3
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 1.4e-18 95.9 75 68.0
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 2.4e-18 95.1 75 69.3
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 4.1e-18 94.4 70 71.4
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 4.1e-18 94.4 70 71.4
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 7.0e-18 93.6 75 68.0
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.2e-17 92.8 70 71.4
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 1.2e-17 92.8 75 68.0
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 1.6e-17 92.4 75 66.7
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.0e-17 92.0 75 66.7
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 3.5e-17 91.3 75 66.7
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 7.7e-17 90.1 75 64.0
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.0e-16 89.7 75 64.0
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 1.3e-16 89.4 72 65.3
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.8e-16 87.8 71 67.6
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 8.5e-16 86.7 78 66.7
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.1e-15 86.3 71 66.2
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 1.5e-15 85.9 77 68.8
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 2.5e-15 85.1 73 67.1
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 2.5e-15 85.1 70 65.7
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 4.2e-15 84.3 75 64.0
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 4.2e-15 84.3 78 65.4
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 4.2e-15 84.3 75 65.3
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 5.5e-15 84.0 77 62.3
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 7.2e-15 83.6 77 63.6
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 9.4e-15 83.2 75 61.3
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 9.4e-15 83.2 68 64.7
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 9.4e-15 83.2 77 62.3
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.1e-14 82.0 70 64.3
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 2.1e-14 82.0 64 67.2
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 3.6e-14 81.3 75 61.3
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 4.7e-14 80.9 77 61.0
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 4.7e-14 80.9 77 61.0
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 8.0e-14 80.1 73 63.0
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 1.0e-13 79.7 75 58.7
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.0e-13 79.7 77 61.0
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 2.3e-13 78.6 79 57.0
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 2.3e-13 78.6 77 62.3
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 2.3e-13 78.6 69 65.2
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 2.3e-13 78.6 67 61.2
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 2.3e-13 78.6 77 59.7
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 3.0e-13 78.2 75 61.3
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 6.8e-13 77.0 73 60.3
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 7.5e-12 73.6 77 58.4
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 9.7e-12 73.2 64 62.5
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 1.3e-11 72.8 78 56.4
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.7e-11 72.4 75 62.7
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 2.2e-11 72.0 68 58.8
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 2.2e-11 72.0 69 62.3
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.7e-11 71.2 63 68.3
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 6.3e-11 70.5 77 57.1
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.1e-10 69.7 75 56.0
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.1e-10 69.7 75 56.0
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.4e-10 69.3 75 54.7
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.4e-10 69.3 75 54.7
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.4e-10 69.3 70 55.7
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.4e-10 69.3 62 66.1
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.4e-10 69.3 64 62.5
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 2.4e-10 68.6 75 54.7
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 2.4e-10 68.6 75 53.3
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 3.1e-10 68.2 75 53.3
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 3.1e-10 68.2 75 53.3
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 3.1e-10 68.2 75 53.3
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.1e-10 67.8 70 54.3
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 4.1e-10 67.8 75 53.3
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 4.1e-10 67.8 75 56.0
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.3e-10 67.4 75 54.7
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 5.3e-10 67.4 64 57.8
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 7.0e-10 67.0 75 53.3
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 2.0e-09 65.5 76 53.9
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 2.7e-09 65.1 75 50.7
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 3.5e-09 64.7 75 50.7
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 1.3e-08 62.8 60 63.3
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 1.3e-08 62.8 60 63.3
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 3.8e-08 61.2 77 50.6
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 5.0e-08 60.8 48 64.6
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.1e-07 59.7 54 61.1
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.1e-07 59.7 55 61.8
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 1.2e-06 56.2 59 52.5
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.1e-06 55.5 77 49.4
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 3.6e-06 54.7 46 58.7
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 4.7e-06 54.3 68 44.1


User provided reference genes

Program Settings