Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 0.0e+00 1248.4 653 100.0
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 0.0e+00 1214.1 654 97.6
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 0.0e+00 1077.4 654 85.6
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 9.9e-278 959.9 574 90.1
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 9.3e-260 900.2 658 75.4
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 2.3e-250 869.0 661 73.4
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 1.5e-249 866.3 661 70.7
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 3.3e-249 865.1 654 73.5
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 3.3e-249 865.1 654 73.5
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 1.7e-248 862.8 649 73.8
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 1.4e-247 859.8 654 74.3
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.4e-247 859.0 661 72.0
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 1.2e-246 856.7 660 72.6
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 2.6e-246 855.5 658 72.6
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 1.7e-245 852.8 658 72.5
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 2.2e-245 852.4 659 71.5
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.2e-243 846.7 662 72.4
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 4.7e-243 844.7 688 66.6
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 3.7e-240 835.1 634 72.9
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.1e-239 833.6 626 74.1
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.8e-239 832.8 663 70.4
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 4.5e-238 828.2 654 71.6
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 1.0e-237 827.0 657 71.1
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.3e-237 826.6 661 70.7
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.3e-237 826.6 664 70.0
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.9e-237 825.5 661 70.7
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 5.5e-236 821.2 601 76.4
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 2.1e-235 819.3 670 69.1
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 4.7e-235 818.1 656 70.4
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.8e-234 816.2 718 66.3
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 8.8e-234 813.9 683 69.1
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 1.5e-233 813.1 660 70.0
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 2.8e-232 808.9 655 69.2
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 2.8e-232 808.9 649 70.4
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 1.2e-230 803.5 594 75.1
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 2.6e-230 802.4 660 69.2
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.5e-228 796.6 662 68.3
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 4.7e-227 791.6 659 67.8
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 5.2e-226 788.1 596 74.7
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 3.3e-225 785.4 661 67.9
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 8.2e-224 780.8 654 69.3
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.4e-223 780.0 664 67.2
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 2.4e-223 779.2 664 68.7
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 4.5e-222 775.0 618 70.1
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 3.8e-221 771.9 654 68.3
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.5e-220 770.0 658 67.9
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 1.6e-219 766.5 661 68.7
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.0e-218 763.8 625 69.1
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.2e-217 760.4 656 67.5
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 2.0e-217 759.6 663 65.8
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 1.3e-216 756.9 655 66.0
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 2.8e-216 755.7 653 64.5
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 3.7e-216 755.4 661 67.6
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.4e-215 753.4 658 67.2
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 7.0e-215 751.1 657 65.9
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 9.1e-215 750.7 673 65.2
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 2.7e-214 749.2 661 63.2
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 5.9e-214 748.0 659 64.3
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 2.3e-213 746.1 781 58.5
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 2.5e-212 742.7 671 65.6
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.8e-211 739.2 671 63.9
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 6.1e-211 738.0 661 65.8
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 3.4e-209 732.3 650 65.7
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 2.4e-207 726.1 628 65.4
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 6.6e-205 718.0 538 75.8
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.6e-201 706.1 582 70.8
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 7.5e-201 704.5 663 63.0
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 2.9e-200 702.6 669 62.2
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 1.9e-196 689.9 649 63.0
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 3.3e-196 689.1 509 74.5
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.1e-194 684.1 527 73.6
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.8e-194 683.3 724 55.1
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 3.4e-193 679.1 632 63.9
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 4.4e-193 678.7 648 61.4
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 1.9e-191 673.3 512 74.2
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 1.6e-190 670.2 650 60.5
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 1.5e-188 663.7 682 59.7
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 1.5e-188 663.7 648 62.8
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 2.1e-187 659.8 632 61.2
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 1.1e-186 657.5 648 60.8
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 1.4e-186 657.1 647 60.7
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 3.7e-184 649.0 648 59.7
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 3.7e-184 649.0 648 59.7
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 4.9e-184 648.7 647 60.1
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 4.9e-184 648.7 647 60.1
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 4.9e-184 648.7 647 60.1
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 2.4e-183 646.4 651 59.3
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 9.2e-183 644.4 627 62.2
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 3.0e-181 639.4 652 59.4
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 3.0e-181 639.4 652 59.4
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 2.1e-179 633.3 679 58.0
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 2.8e-179 632.9 650 57.8
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 2.4e-175 619.8 452 75.7
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 8.1e-171 604.7 586 59.2
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 4.9e-168 595.5 662 52.9
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 1.9e-167 593.6 662 53.0
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.7e-166 589.7 654 54.4
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 3.3e-164 582.8 639 57.3
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 9.6e-164 581.3 607 58.5
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 5.8e-161 572.0 607 56.2
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.4e-159 567.4 648 55.1
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.2e-158 564.3 704 49.4
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.8e-149 533.9 413 72.9
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 1.4e-146 524.2 657 52.5
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 1.8e-146 523.9 451 62.7
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 6.9e-146 521.9 660 50.5
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 1.1e-138 498.0 452 65.9
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 9.0e-138 495.0 616 47.6
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 6.7e-133 478.8 582 49.8
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 9.4e-119 431.8 664 44.3
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 2.1e-118 430.6 561 47.8
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 5.3e-114 416.0 488 54.7
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 2.2e-112 410.6 540 47.6
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 4.0e-101 373.2 687 39.0
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 1.4e-98 364.8 316 71.8
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 2.4e-98 364.0 560 45.2
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 3.5e-89 333.6 286 75.2
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.2e-75 287.7 297 56.6
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 1.9e-71 274.6 304 58.6
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 9.5e-71 272.3 180 88.9
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 1.1e-58 232.3 165 88.5
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.7e-57 227.6 184 63.6
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 5.6e-55 219.9 318 41.2
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 9.0e-53 212.6 290 42.1
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 6.4e-51 206.5 192 75.0
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.4e-50 204.5 291 48.8
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 9.3e-50 202.6 166 63.3
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 5.1e-48 196.8 228 63.6
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 2.1e-46 191.4 305 39.0
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 2.8e-46 191.0 150 71.3
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 2.9e-43 181.0 102 96.1
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 5.5e-42 176.8 285 45.6
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 4.6e-41 173.7 215 44.2
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 6.5e-35 153.3 83 84.3
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.6e-25 122.1 227 34.8
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.3e-24 118.2 130 49.2
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.5e-23 114.8 89 76.4
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 1.3e-22 112.5 328 28.4
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 5.9e-20 103.6 58 82.8
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 5.0e-19 100.5 73 68.5
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 1.1e-15 89.4 63 63.5
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 7.4e-15 86.7 113 41.6
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 7.4e-15 86.7 113 41.6
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 3.7e-14 84.3 177 33.9
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 1.0e-11 76.3 146 32.2
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.0e-11 76.3 118 43.2
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 1.0e-11 76.3 53 64.2
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.3e-11 75.9 72 55.6
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.3e-11 75.9 72 55.6
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 9.4e-10 69.7 136 33.1
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 6.1e-09 67.0 96 52.1
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 2.6e-07 61.6 36 88.9
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 5.7e-07 60.5 32 93.8
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 2.2e-06 58.5 35 82.9


User provided reference genes

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