Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 9.2e-56 219.9 107 100.0
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.6e-50 201.8 107 91.6
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.8e-44 181.8 108 82.4
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 7.3e-29 130.6 115 67.0
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 1.6e-20 102.8 108 54.6
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 7.1e-16 87.4 111 45.9
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 7.1e-16 87.4 110 42.7
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.5e-15 85.1 116 44.8
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.5e-15 85.1 116 44.8
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 3.5e-15 85.1 110 44.5
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.6e-15 84.7 112 44.6
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.6e-15 84.7 112 44.6
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.6e-15 84.7 112 44.6
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 6.0e-15 84.3 112 45.5
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 7.9e-15 84.0 107 45.8
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 7.9e-15 84.0 107 45.8
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 7.9e-15 84.0 113 45.1
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 7.9e-15 84.0 107 41.1
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 7.9e-15 84.0 111 42.3
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.0e-14 83.6 114 46.5
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 1.3e-14 83.2 117 41.0
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.8e-14 82.8 111 43.2
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 2.3e-14 82.4 107 44.9
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 2.3e-14 82.4 107 44.9
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 2.3e-14 82.4 107 44.9
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 3.0e-14 82.0 112 42.0
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 3.0e-14 82.0 108 47.2
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 3.0e-14 82.0 107 46.7
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 3.9e-14 81.6 116 42.2
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 3.9e-14 81.6 107 43.0
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 5.1e-14 81.3 107 44.9
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 6.7e-14 80.9 112 42.0
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 8.7e-14 80.5 107 42.1
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 1.1e-13 80.1 107 43.9
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.1e-13 80.1 107 40.2
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 1.5e-13 79.7 110 42.7
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 1.5e-13 79.7 110 42.7
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.9e-13 79.3 111 42.3
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.9e-13 79.3 112 42.9
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.5e-13 79.0 107 43.9
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 3.3e-13 78.6 107 43.9
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.3e-13 78.6 108 42.6
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 3.3e-13 78.6 108 42.6
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 3.3e-13 78.6 112 41.1
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 4.3e-13 78.2 107 43.0
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 7.4e-13 77.4 112 42.0
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 9.6e-13 77.0 112 43.8
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 1.3e-12 76.6 120 43.3
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 1.6e-12 76.3 107 40.2
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.6e-12 76.3 108 41.7
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 2.1e-12 75.9 109 40.4
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 2.1e-12 75.9 109 44.0
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.1e-12 75.9 114 43.0
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.8e-12 75.5 110 42.7
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.8e-12 75.5 110 42.7
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 2.8e-12 75.5 126 34.9
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.8e-12 75.5 114 41.2
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 3.7e-12 75.1 107 40.2
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 4.8e-12 74.7 122 38.5
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 6.2e-12 74.3 108 40.7
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 6.2e-12 74.3 108 40.7
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 6.2e-12 74.3 123 37.4
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 8.2e-12 73.9 115 37.4
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.4e-11 73.2 107 42.1
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.4e-11 73.2 109 43.1
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.4e-11 73.2 115 40.0
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 1.4e-11 73.2 107 40.2
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 2.4e-11 72.4 107 41.1
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 2.4e-11 72.4 115 40.0
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 3.1e-11 72.0 109 41.3
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 3.1e-11 72.0 114 39.5
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 4.0e-11 71.6 107 38.3
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 4.0e-11 71.6 112 40.2
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 5.3e-11 71.2 104 39.4
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 5.3e-11 71.2 112 38.4
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 5.3e-11 71.2 112 39.3
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 6.9e-11 70.9 113 37.2
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 9.0e-11 70.5 125 36.0
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 9.0e-11 70.5 112 40.2
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.2e-10 70.1 120 40.8
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.2e-10 70.1 113 39.8
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.5e-10 69.7 120 40.8
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.0e-10 69.3 112 38.4
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 2.0e-10 69.3 101 41.6
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.6e-10 68.9 107 37.4
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 2.6e-10 68.9 109 40.4
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 2.6e-10 68.9 115 37.4
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 4.5e-10 68.2 119 41.2
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.5e-10 68.2 114 37.7
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 5.8e-10 67.8 126 34.1
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 1.0e-09 67.0 107 39.3
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 1.0e-09 67.0 107 39.3
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 1.3e-09 66.6 107 39.3
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.3e-09 66.6 112 40.2
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 1.3e-09 66.6 109 37.6
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.7e-09 66.2 112 34.8
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 2.2e-09 65.9 107 39.3
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 2.2e-09 65.9 107 38.3
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 2.2e-09 65.9 107 38.3
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 2.2e-09 65.9 106 42.5
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 2.9e-09 65.5 116 37.1
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 4.9e-09 64.7 107 37.4
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 6.5e-09 64.3 99 38.4
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 6.5e-09 64.3 112 40.2
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.1e-08 63.5 116 39.7
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 1.1e-08 63.5 114 36.0
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.4e-08 63.2 94 43.6
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.9e-08 62.8 112 40.2
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 1.9e-08 62.8 110 35.5
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 2.5e-08 62.4 106 35.8
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 2.5e-08 62.4 107 33.6
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 5.5e-08 61.2 95 41.1
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 5.5e-08 61.2 114 37.7
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 5.5e-08 61.2 99 39.4
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 5.5e-08 61.2 96 42.7
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 7.1e-08 60.8 94 38.3
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 1.6e-07 59.7 95 36.8
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.6e-07 59.7 111 36.9
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 2.1e-07 59.3 91 39.6
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 2.1e-07 59.3 88 40.9
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 2.7e-07 58.9 60 51.7
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 2.7e-07 58.9 87 40.2
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 6.0e-07 57.8 114 36.0
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 1.3e-06 56.6 92 41.3
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 3.0e-06 55.5 102 35.3
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 3.9e-06 55.1 92 42.4
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 3.9e-06 55.1 109 32.1
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 3.9e-06 55.1 100 40.0


User provided reference genes

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