Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 0.0e+00 1160.2 587 100.0
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 0.0e+00 1091.3 577 96.5
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 0.0e+00 1080.9 604 91.7
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 8.9e-294 1013.1 579 86.5
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 6.6e-257 890.6 578 78.4
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 1.1e-256 889.8 576 77.8
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.6e-255 885.9 577 77.5
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.6e-255 885.9 577 77.5
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.8e-255 885.2 576 77.3
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 2.8e-255 885.2 576 76.7
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 8.1e-255 883.6 577 77.3
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 1.4e-254 882.9 577 76.8
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 2.0e-253 879.0 575 75.7
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 2.6e-253 878.6 576 79.2
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 7.6e-253 877.1 574 76.1
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 3.8e-252 874.8 569 77.3
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 3.8e-252 874.8 571 78.1
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 6.4e-252 874.0 576 76.7
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 9.3e-251 870.2 588 74.3
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 1.8e-249 865.9 565 75.9
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 3.0e-249 865.1 584 73.3
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 3.9e-249 864.8 576 77.3
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 5.1e-249 864.4 571 77.4
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 6.7e-249 864.0 565 76.3
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 6.7e-249 864.0 575 75.0
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 3.3e-248 861.7 575 75.5
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 5.6e-248 860.9 563 77.1
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 9.6e-248 860.1 566 77.6
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 1.3e-244 849.7 565 75.2
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 1.7e-244 849.4 566 75.6
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 2.2e-244 849.0 572 74.1
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 8.4e-244 847.0 566 75.3
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 3.5e-242 841.6 569 74.5
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 3.0e-241 838.6 570 74.6
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 3.9e-241 838.2 566 74.6
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 8.7e-241 837.0 562 75.3
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 2.5e-240 835.5 557 74.3
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 4.3e-240 834.7 561 73.8
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 1.4e-238 829.7 560 73.2
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 3.1e-238 828.6 562 74.4
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 3.1e-238 828.6 568 71.5
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 4.1e-238 828.2 560 73.4
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 4.1e-238 828.2 560 73.4
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 4.1e-238 828.2 553 77.6
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 6.9e-238 827.4 557 73.2
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 8.4e-236 820.5 600 69.0
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 1.1e-235 820.1 599 68.6
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 1.9e-235 819.3 557 72.7
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 2.5e-235 818.9 575 69.9
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 2.5e-235 818.9 578 71.1
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 4.2e-235 818.1 575 70.3
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 4.2e-235 818.1 568 73.1
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 5.5e-235 817.8 571 71.6
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 1.2e-234 816.6 573 71.4
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 4.6e-234 814.7 573 70.9
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 1.0e-233 813.5 575 70.4
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 2.3e-233 812.4 563 73.7
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 2.3e-233 812.4 573 71.6
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 3.9e-233 811.6 559 72.3
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 6.7e-233 810.8 579 74.3
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 6.7e-233 810.8 571 69.5
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 1.5e-232 809.7 567 71.8
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 2.5e-232 808.9 569 73.8
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.2e-231 805.8 576 72.6
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 1.4e-230 803.1 573 70.3
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 3.1e-230 802.0 577 69.2
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 4.5e-229 798.1 564 70.4
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 1.7e-228 796.2 578 69.4
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 2.2e-228 795.8 575 68.9
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 3.8e-228 795.0 575 68.9
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 8.5e-228 793.9 575 68.9
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 2.5e-227 792.3 577 68.8
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 4.2e-227 791.6 575 68.9
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 6.1e-226 787.7 567 69.5
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 1.4e-225 786.6 564 71.3
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 6.3e-223 777.7 562 70.1
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 8.5e-220 767.3 617 64.8
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 1.4e-217 760.0 571 68.5
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 2.0e-205 719.5 463 76.9
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 1.1e-203 713.8 586 63.3
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 2.7e-202 709.1 459 76.0
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 8.8e-201 704.1 568 63.7
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 4.4e-200 701.8 559 65.5
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 5.2e-193 678.3 647 56.1
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 4.5e-189 665.2 471 74.1
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 1.1e-182 644.0 416 78.1
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 8.6e-180 634.4 421 74.6
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 1.2e-176 624.0 633 52.9
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 4.9e-175 618.6 405 74.6
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 1.9e-166 590.1 406 72.9
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 7.1e-166 588.2 414 72.0
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 7.8e-165 584.7 634 50.9
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 7.8e-165 584.7 634 50.9
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 7.3e-163 578.2 417 69.1
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 3.1e-161 572.8 404 70.0
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 3.2e-158 562.8 573 54.8
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 2.5e-155 553.1 405 69.1
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 5.6e-147 525.4 401 66.6
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 2.0e-144 516.9 543 50.8
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.9e-134 483.8 307 80.5
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 7.4e-131 471.9 303 75.9
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 3.8e-127 459.5 329 69.9
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.7e-119 434.1 569 43.8
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 5.3e-113 412.5 656 39.0
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 6.1e-109 399.1 239 84.5
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.1e-91 341.7 197 86.3
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 1.2e-75 288.5 163 87.7
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.3e-71 274.2 537 36.1
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.5e-62 245.0 397 38.5
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 4.6e-56 223.4 156 73.1
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 3.2e-49 200.7 135 71.9
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 3.9e-47 193.7 115 79.1
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 2.8e-45 187.6 103 87.4
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 3.6e-45 187.2 113 78.8
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 4.0e-44 183.7 151 66.2
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 1.1e-41 175.6 104 80.8
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 1.1e-30 139.0 159 51.6
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 6.4e-26 123.2 68 86.8
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 5.1e-15 87.0 54 74.1
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 1.4e-09 68.9 162 29.0
Zm00001eb418740 Zea mays HOM05D000563 ORTHO05D442000 3.3e-06 57.8 72 40.3
Pp3c11_17010 Physcomitrium patens HOM05D002203 ORTHO05D002647 5.7e-06 57.0 90 31.1
Os08g0226800 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 9.7e-06 56.2 124 33.1


User provided reference genes

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