Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 0.0e+00 1256.1 622 100.0
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 3.2e-302 1041.2 620 85.8
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 4.8e-282 974.2 606 82.5
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 8.9e-252 873.6 606 75.1
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 4.2e-225 785.0 608 67.4
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.6e-221 773.1 561 70.4
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 2.6e-219 765.8 550 71.8
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 1.0e-215 753.8 592 65.9
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 2.7e-200 702.6 535 65.2
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 4.6e-200 701.8 598 60.9
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 7.9e-200 701.0 604 59.8
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 1.8e-199 699.9 607 59.1
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 3.9e-199 698.7 535 65.0
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 1.1e-198 697.2 542 66.1
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 2.8e-197 692.6 535 65.6
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.1e-196 690.6 619 57.7
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 1.5e-195 686.8 602 58.1
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 1.4e-193 680.2 540 62.0
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 1.9e-193 679.9 564 60.8
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 4.2e-193 678.7 565 61.4
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 4.2e-193 678.7 561 61.5
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 4.2e-193 678.7 546 62.8
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 2.1e-192 676.4 610 58.2
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 6.1e-192 674.9 604 57.6
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 6.1e-192 674.9 564 60.5
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.0e-191 674.1 564 61.2
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 1.4e-191 673.7 561 61.7
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 1.4e-191 673.7 564 61.2
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 1.4e-191 673.7 609 57.1
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 1.8e-191 673.3 591 59.9
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 6.7e-191 671.4 548 60.4
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 2.0e-190 669.8 603 56.9
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 3.3e-190 669.1 620 57.7
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.3e-190 669.1 531 62.5
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 4.4e-190 668.7 531 62.0
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 5.7e-190 668.3 531 61.8
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 3.7e-189 665.6 508 65.0
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 2.4e-188 662.9 540 61.3
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 6.9e-188 661.4 595 57.6
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 1.2e-187 660.6 533 61.4
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 7.7e-187 657.9 556 61.5
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 1.3e-186 657.1 609 55.8
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 3.8e-186 655.6 522 61.5
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 5.0e-186 655.2 531 61.4
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.4e-185 653.7 529 61.8
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 4.7e-184 648.7 534 60.9
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 7.9e-184 647.9 596 55.9
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 1.4e-183 647.1 529 59.9
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.3e-183 646.4 529 59.9
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.0e-183 646.0 563 57.9
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 3.9e-183 645.6 564 57.1
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 2.6e-182 642.9 573 57.4
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 5.7e-182 641.7 567 59.1
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 7.4e-182 641.3 524 61.1
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 1.3e-181 640.6 564 56.7
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.3e-181 640.6 606 56.8
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.2e-181 639.8 529 60.7
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.4e-180 637.1 529 61.6
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 3.1e-180 636.0 548 58.2
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 5.3e-180 635.2 524 59.9
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 3.5e-179 632.5 527 59.4
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 1.1e-177 627.5 609 54.2
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 4.2e-177 625.5 528 60.4
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 2.1e-176 623.2 538 57.6
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.3e-175 619.8 522 59.6
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 2.3e-175 619.8 522 59.2
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 3.0e-175 619.4 571 56.6
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 3.0e-175 619.4 585 54.5
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 8.8e-175 617.8 628 51.0
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 9.7e-174 614.4 541 57.7
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.2e-171 607.4 513 59.6
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 1.9e-169 600.1 524 57.6
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 7.2e-169 598.2 548 55.7
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 1.4e-167 594.0 626 50.6
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.2e-165 586.6 523 57.7
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 4.8e-165 585.5 524 57.4
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 1.1e-164 584.3 521 57.4
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 4.5e-163 578.9 524 57.1
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 1.3e-162 577.4 522 55.9
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 2.9e-162 576.2 456 62.9
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 1.0e-159 567.8 575 50.4
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.5e-158 563.9 539 53.2
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 5.7e-158 562.0 542 53.0
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.7e-157 560.5 532 53.9
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 2.2e-157 560.1 537 53.1
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 3.1e-156 556.2 525 54.3
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.0e-156 555.1 537 54.6
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.9e-154 549.7 529 53.3
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 6.6e-154 548.5 525 53.5
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 5.6e-153 545.4 526 52.7
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.6e-152 543.9 529 55.0
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.8e-151 540.4 566 50.4
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 3.7e-149 532.7 508 53.3
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 6.4e-149 531.9 551 49.5
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 3.2e-148 529.6 606 49.5
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 6.0e-147 525.4 558 50.2
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.0e-146 524.6 375 72.0
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 2.5e-145 520.0 478 59.4
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.1e-144 516.9 450 59.6
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.1e-143 514.6 534 50.4
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.8e-143 513.8 491 54.0
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.9e-141 506.5 465 57.4
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 5.4e-140 502.3 533 50.1
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 7.8e-139 498.4 524 49.6
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 3.1e-135 486.5 545 51.6
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 3.4e-134 483.0 575 46.4
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 6.4e-133 478.8 517 49.1
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.2e-131 474.6 527 46.9
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 3.9e-130 469.5 527 48.4
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 8.6e-130 468.4 431 54.8
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.5e-129 466.8 527 49.3
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 8.1e-128 461.8 539 45.5
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 5.8e-126 455.7 544 44.5
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 4.9e-125 452.6 456 51.8
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 2.4e-124 450.3 593 42.2
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 3.5e-123 446.4 328 66.2
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 3.0e-122 443.4 433 51.3
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 6.6e-114 415.6 496 46.2
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.2e-110 404.8 382 55.0
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.6e-110 403.7 343 59.8
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 5.8e-110 402.5 429 51.7
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 2.2e-109 400.6 360 56.9
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 6.0e-107 392.5 331 58.9
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.0e-106 391.7 327 60.9
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 2.3e-106 390.6 329 58.4
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.9e-103 379.0 342 54.4
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 2.5e-97 360.5 451 46.6
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 9.0e-95 352.1 681 33.6
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 1.1e-92 345.1 483 42.7
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.2e-78 298.5 492 39.6
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 7.7e-78 295.8 231 68.0
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.3e-77 295.0 275 53.1
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.4e-76 291.6 265 52.8
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 8.8e-74 282.3 254 52.8
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.7e-70 269.2 346 43.1
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 7.2e-68 262.7 641 30.7
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 7.4e-65 252.7 238 56.7
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.8e-64 250.8 238 56.7
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 8.2e-64 249.2 265 47.9
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 1.8e-63 248.1 147 78.2
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 1.6e-62 245.0 540 32.0
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 3.8e-61 240.4 146 75.3
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 7.2e-60 236.1 190 61.6
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 2.6e-57 227.6 145 73.1
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 2.7e-51 207.6 135 71.9
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 3.6e-51 207.2 146 65.8
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.0e-51 206.1 194 50.0
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.9e-45 187.6 154 59.7
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 3.6e-43 180.6 186 54.3
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.8e-42 176.4 128 65.6
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.0e-39 166.4 116 66.4
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.0e-34 150.6 170 40.0
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 8.9e-34 149.4 151 49.7
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.5e-33 148.7 106 66.0
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.6e-33 147.9 197 39.1
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.2e-32 144.8 140 55.0
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.9e-21 107.5 123 44.7
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 3.3e-20 104.4 76 56.6
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 5.4e-15 87.0 67 56.7
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 3.5e-14 84.3 73 53.4
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 1.1e-12 79.3 73 53.4
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 7.6e-09 66.6 54 55.6


User provided reference genes

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