Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 5.3e-240 833.9 420 100.0
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 1.1e-229 799.7 420 95.7
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 2.8e-180 635.6 383 84.9
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 4.7e-172 608.2 392 74.7
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 8.9e-171 604.0 419 70.6
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 1.2e-170 603.6 398 72.6
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 5.8e-170 601.3 391 73.1
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 1.1e-168 597.0 402 71.9
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 5.4e-168 594.7 394 73.6
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 1.2e-167 593.6 391 72.6
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 2.0e-167 592.8 395 71.9
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 2.0e-167 592.8 404 69.6
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 2.0e-167 592.8 393 73.0
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 2.7e-167 592.4 417 70.3
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 6.0e-167 591.3 423 69.7
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 1.0e-166 590.5 415 71.6
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 1.7e-166 589.7 392 72.4
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 2.3e-166 589.3 419 68.7
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 3.9e-166 588.6 424 68.4
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 3.9e-166 588.6 396 71.5
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 8.6e-166 587.4 405 69.4
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 1.5e-165 586.6 427 69.1
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 3.3e-165 585.5 391 72.9
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 5.6e-165 584.7 432 67.4
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 9.5e-165 583.9 396 71.0
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 1.6e-164 583.2 396 71.0
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 1.6e-164 583.2 438 66.2
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 1.8e-163 579.7 391 71.9
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 6.8e-163 577.8 426 67.8
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 1.2e-162 577.0 398 71.6
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 1.5e-162 576.6 391 70.1
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 2.0e-162 576.2 394 71.3
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 7.5e-162 574.3 413 69.7
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 9.9e-162 573.9 420 67.1
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 2.9e-161 572.4 390 71.8
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 6.4e-161 571.2 423 66.7
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 5.4e-160 568.2 412 67.7
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 7.1e-160 567.8 419 66.3
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 1.2e-159 567.0 400 70.2
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 1.0e-158 563.9 391 70.1
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 1.7e-158 563.1 404 66.8
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 2.3e-158 562.8 390 68.7
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 2.3e-158 562.8 403 68.7
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 5.1e-158 561.6 452 63.5
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 1.1e-157 560.5 408 67.9
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.5e-157 560.1 396 68.7
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 4.3e-157 558.5 399 68.4
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.6e-156 556.6 391 70.3
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.6e-156 556.6 399 68.2
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 2.1e-156 556.2 407 66.1
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 2.8e-156 555.8 401 68.8
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 4.7e-156 555.1 392 69.6
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 6.2e-156 554.7 401 68.6
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 1.8e-155 553.1 390 70.5
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 2.4e-155 552.7 427 64.6
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 2.4e-155 552.7 439 63.8
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 5.2e-155 551.6 417 65.2
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 1.5e-154 550.1 452 62.8
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 3.4e-154 548.9 397 66.5
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.7e-153 546.6 395 66.3
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 8.4e-153 544.3 398 67.3
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 1.9e-152 543.1 397 66.5
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 1.9e-152 543.1 390 67.9
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 2.4e-152 542.7 403 66.7
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 4.1e-152 542.0 431 62.2
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 4.1e-152 542.0 391 68.3
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 2.1e-151 539.7 404 66.1
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 2.7e-151 539.3 392 67.9
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 1.0e-150 537.3 403 66.0
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 1.3e-150 537.0 393 67.4
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.3e-150 537.0 421 64.8
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 1.7e-150 536.6 404 66.3
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 3.9e-150 535.4 396 67.4
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 5.1e-150 535.0 404 65.1
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 3.3e-149 532.3 371 69.8
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 3.3e-149 532.3 437 62.5
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 4.3e-149 531.9 400 66.2
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 3.6e-148 528.9 394 67.3
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 3.6e-148 528.9 394 67.3
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 1.4e-147 526.9 396 67.4
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 4.0e-147 525.4 316 82.3
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 1.2e-143 513.8 367 68.1
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 1.7e-142 510.0 404 62.9
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 6.6e-142 508.1 432 60.4
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 2.1e-140 503.1 410 62.7
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 1.4e-139 500.4 404 63.1
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 1.3e-137 493.8 392 63.3
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.6e-130 469.5 328 70.4
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 8.7e-126 454.5 415 55.4
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 1.9e-125 453.4 393 60.3
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 2.5e-125 453.0 329 65.0
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 2.4e-123 446.4 330 66.4
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 3.4e-122 442.6 395 56.2
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 3.4e-122 442.6 308 70.5
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.0e-118 431.0 310 67.4
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 1.5e-114 417.2 279 71.3
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 1.0e-110 404.4 320 64.7
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 2.5e-109 399.8 314 64.0
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 7.4e-109 398.3 346 59.0
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 5.0e-105 385.6 356 53.7
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 6.3e-100 368.6 408 48.3
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 1.4e-99 367.5 285 64.2
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 1.4e-99 367.5 285 64.2
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 3.8e-97 359.4 291 61.9
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 5.2e-94 349.0 384 50.5
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 3.7e-84 316.2 213 70.4
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.4e-83 314.3 241 66.0
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 7.0e-83 312.0 239 63.6
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 9.1e-83 311.6 437 42.3
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 1.3e-81 307.8 237 62.9
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 8.0e-71 271.9 188 68.6
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 5.9e-66 255.8 350 43.1
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 5.8e-61 239.2 157 73.2
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 2.2e-60 237.3 148 76.4
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 3.7e-52 209.9 411 35.3
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 4.1e-51 206.5 166 62.7
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 1.7e-49 201.1 163 62.0
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 6.6e-49 199.1 183 56.8
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 4.7e-47 193.0 249 43.4
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 3.2e-43 180.3 145 60.0
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 1.9e-40 171.0 430 31.9
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 4.7e-39 166.4 448 31.9
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 4.7e-39 166.4 120 70.0
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 4.9e-36 156.4 444 29.3
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.1e-35 155.2 425 30.1
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.2e-34 151.8 429 30.5
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 2.4e-27 127.5 87 69.0
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 4.3e-24 116.7 235 36.6
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 5.6e-24 116.3 73 69.9
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 4.8e-23 113.2 114 50.0
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 4.0e-22 110.2 89 64.0
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 9.0e-22 109.0 81 64.2
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.5e-21 108.2 67 76.1
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 1.3e-20 105.1 397 28.2
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 9.3e-19 99.0 64 79.7
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 4.8e-15 86.7 84 53.6
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 5.8e-13 79.7 53 67.9
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 8.7e-09 65.9 412 22.3
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 2.1e-07 61.2 37 78.4


User provided reference genes

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