Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019082.2 Cucumis melo HOM05D007733 ORTHO05D009786 6.1e-28 126.7 62 100.0
CsaV3_4G029620 Cucumis sativus L. HOM05D007733 ORTHO05D009786 5.2e-27 123.6 62 96.8
Sed0021033 Sechium edule HOM05D007733 ORTHO05D009786 5.9e-23 110.2 57 89.5
PGSC0003DMG401008361 Solanum tuberosum HOM05D007733 ORTHO05D009786 3.3e-21 104.4 53 90.6
CSS0035024 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 5.6e-21 103.6 55 85.5
Peaxi162Scf00696g00026 Petunia axillaris HOM05D007733 ORTHO05D009786 9.5e-21 102.8 53 88.7
CiPaw.09G048000 Carya illinoinensis HOM05D007733 ORTHO05D009786 1.2e-20 102.4 55 85.5
Cc06_g19360 Coffea canephora HOM05D007733 ORTHO05D009786 1.2e-20 102.4 55 85.5
Oeu063785.1 Olea europaea HOM05D007733 ORTHO05D009786 1.2e-20 102.4 55 87.3
Solyc10g078420.2 Solanum lycopersicum HOM05D007733 ORTHO05D009786 1.2e-20 102.4 53 88.7
MD00G1018100 Malus domestica HOM05D007733 ORTHO05D009786 2.8e-20 101.3 57 82.5
Manes.01G136000 Manihot esculenta HOM05D007733 ORTHO05D009786 2.8e-20 101.3 56 83.9
Atru.chr1.1436 Acer truncatum HOM05D007733 ORTHO05D009786 4.7e-20 100.5 52 88.5
MD12G1095600 Malus domestica HOM05D007733 ORTHO05D009786 4.7e-20 100.5 53 86.8
Lalb_Chr06g0173691 Lupinus albus HOM05D007733 ORTHO05D009786 6.2e-20 100.1 53 86.8
CAN.G960.60 Capsicum annuum HOM05D007733 ORTHO05D009786 1.0e-19 99.4 53 84.9
Glyma.12G186000 Glycine max HOM05D007733 ORTHO05D009786 2.3e-19 98.2 53 83.0
Potri.016G036400 Populus trichocarpa HOM05D007733 ORTHO05D009786 2.3e-19 98.2 56 82.1
Prupe.7G032300 Prunus persica HOM05D007733 ORTHO05D009786 2.3e-19 98.2 53 86.8
CDE04G2892 Ceratophyllum demersum HOM05D007733 ORTHO05D009786 3.1e-19 97.8 53 81.1
Hma1.2p1_0757F.1_g213300 Hydrangea macrophylla HOM05D007733 ORTHO05D009786 3.1e-19 97.8 55 83.6
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 4.0e-19 97.4 55 81.8
FAN06G4775 Fragaria x ananassa HOM05D007733 ORTHO05D009786 4.0e-19 97.4 55 81.8
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 4.0e-19 97.4 55 81.8
Migut.J01653 Erythranthe guttata HOM05D007733 ORTHO05D009786 5.2e-19 97.1 56 82.1
Thecc.01G129600 Theobroma cacao HOM05D007733 ORTHO05D009786 6.8e-19 96.7 51 90.2
CSS0016184 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 8.9e-19 96.3 55 81.8
CSS0036430 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 8.9e-19 96.3 55 81.8
Glyma.13G315500 Glycine max HOM05D007733 ORTHO05D009786 8.9e-19 96.3 53 81.1
PGR031G3673 Punica granatum HOM05D007733 ORTHO05D009786 8.9e-19 96.3 55 81.8
TWI74G1577 Tripterygium wilfordii HOM05D007733 ORTHO05D009786 8.9e-19 96.3 54 85.2
SGA_v2.0_scaffold3G01720 Striga asiatica HOM05D007733 ORTHO05D009786 2.6e-18 94.7 57 78.9
Gohir.A11G247101 Gossypium hirsutum HOM05D007733 ORTHO05D009786 3.4e-18 94.4 55 80.0
Os11g0136701 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 3.4e-18 94.4 51 80.4
Aqoxy1G00180 Aquilegia oxysepala HOM05D007733 ORTHO05D009786 4.4e-18 94.0 52 82.7
Phvul.005G122800 Phaseolus vulgaris HOM05D007733 ORTHO05D009786 4.4e-18 94.0 53 81.1
SGA_v2.0_scaffold105G30286 Striga asiatica HOM05D007733 ORTHO05D009786 4.4e-18 94.0 55 80.0
Potri.006G039100 Populus trichocarpa HOM05D007733 ORTHO05D009786 7.5e-18 93.2 51 84.3
THA.LOC104819346 Tarenaya hassleriana HOM05D007733 ORTHO05D009786 7.5e-18 93.2 56 78.6
arahy.Tifrunner.gnm1.ann1.2TE5XM Arachis hypogaea HOM05D007733 ORTHO05D009786 9.8e-18 92.8 53 79.2
RcHm_v2.0_Chr1g0328511 Rosa chinensis HOM05D007733 ORTHO05D009786 9.8e-18 92.8 57 75.4
Duzib264G0681 Durio zibethinus HOM05D007733 ORTHO05D009786 2.2e-17 91.7 55 80.0
RcHm_v2.0_Chr1g0328411 Rosa chinensis HOM05D007733 ORTHO05D009786 2.2e-17 91.7 50 84.0
Os12g0133600 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 3.7e-17 90.9 51 76.5
PSO384G4410 Papaver somniferum HOM05D007733 ORTHO05D009786 3.7e-17 90.9 56 73.2
Aa31LG1G18010 Aethionema arabicum HOM05D007733 ORTHO05D009786 4.9e-17 90.5 52 78.8
RcHm_v2.0_Chr1g0328381 Rosa chinensis HOM05D007733 ORTHO05D009786 4.9e-17 90.5 55 78.2
Thhalv10015230m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 6.4e-17 90.1 52 78.8
AT5G09225 Arabidopsis thaliana HOM05D007733 ORTHO05D009786 8.3e-17 89.7 52 78.8
BraA02t04971Z Brassica rapa HOM05D007733 ORTHO05D009786 8.3e-17 89.7 54 74.1
Medtr1g069390 Medicago truncatula HOM05D007733 ORTHO05D009786 1.1e-16 89.4 52 76.9
Nitab4.5_0000812g0080 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.1e-16 89.4 41 97.6
Psat4g102040 Pisum sativum HOM05D007733 ORTHO05D009786 1.1e-16 89.4 52 78.8
GSVIVG01004069001 Vitis vinifera HOM05D007733 ORTHO05D009786 1.4e-16 89.0 53 79.2
Carub.0006s0778 Capsella rubella HOM05D007733 ORTHO05D009786 1.9e-16 88.6 52 76.9
Nitab4.5_0004588g0050 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.9e-16 88.6 42 92.9
AL6G19610 Arabidopsis lyrata HOM05D007733 ORTHO05D009786 3.2e-16 87.8 51 78.4
CARHR204200 Cardamine hirsuta HOM05D007733 ORTHO05D009786 3.2e-16 87.8 51 78.4
BcaB05g21564 Brassica carinata HOM05D007733 ORTHO05D009786 5.4e-16 87.0 51 76.5
BcaC03g13244 Brassica carinata HOM05D007733 ORTHO05D009786 5.4e-16 87.0 51 76.5
C02p03760 Brassica napus HOM05D007733 ORTHO05D009786 5.4e-16 87.0 51 76.5
BolC2t06337H Brassica oleracea HOM05D007733 ORTHO05D009786 5.4e-16 87.0 51 76.5
CANSAT64G1685 Cannabis sativa HOM05D007733 ORTHO05D009786 5.4e-16 87.0 55 76.4
Lsat_1_v5_gn_5_157040 Lactuca sativa HOM05D007733 ORTHO05D009786 1.6e-15 85.5 46 89.1
MBI19_g20791_MAGBIO Magnolia biondii HOM05D007733 ORTHO05D009786 1.6e-15 85.5 45 84.4
Sp6g34080 Schrenkiella parvula HOM05D007733 ORTHO05D009786 1.6e-15 85.5 51 74.5
Peaxi162Scf00848g00014 Petunia axillaris HOM05D007733 ORTHO05D009786 2.0e-15 85.1 41 90.2
Thhalv10005241m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 2.7e-15 84.7 52 71.2
BraA06t25997Z Brassica rapa HOM05D007733 ORTHO05D009786 6.0e-15 83.6 52 73.1
Oeu022972.2 Olea europaea HOM05D007733 ORTHO05D009786 6.0e-15 83.6 41 92.7
vmacro07790 Vaccinium macrocarpon HOM05D007733 ORTHO05D009786 6.0e-15 83.6 49 77.6
Hund24585 Selenicereus undatus HOM05D007733 ORTHO05D009786 7.8e-15 83.2 42 85.7
HanXRQChr01g0008231 Helianthus annuus HOM05D007733 ORTHO05D009786 1.0e-14 82.8 42 88.1
Manes.02G094502 Manihot esculenta HOM05D007733 ORTHO05D009786 1.3e-14 82.4 50 78.0
BcaB02g09770 Brassica carinata HOM05D007733 ORTHO05D009786 1.7e-14 82.0 52 69.2
Gohir.D11G257301 Gossypium hirsutum HOM05D007733 ORTHO05D009786 2.3e-14 81.6 41 90.2
Gorai.007G275700 Gossypium raimondii HOM05D007733 ORTHO05D009786 2.3e-14 81.6 41 90.2
Sc19g0008160 Simmondsia chinensis HOM05D007733 ORTHO05D009786 2.3e-14 81.6 41 87.8
arahy.Tifrunner.gnm1.ann1.05QC9F Arachis hypogaea HOM05D007733 ORTHO05D009786 3.0e-14 81.3 60 65.0
FAN01G2779 Fragaria x ananassa HOM05D000072 ORTHO05D000026 3.0e-14 81.3 41 87.8
COL.COLO4_35702 Corchorus olitorius HOM05D007733 ORTHO05D009786 3.9e-14 80.9 41 87.8
Peaxi162Scf00696g00024 Petunia axillaris HOM05D007733 ORTHO05D009786 3.9e-14 80.9 39 92.3
A06p30480 Brassica napus HOM05D007733 ORTHO05D009786 6.6e-14 80.1 52 71.2
BcaC01g02637 Brassica carinata HOM05D007733 ORTHO05D009786 5.6e-13 77.0 47 72.3
Zm00001eb093420 Zea mays HOM05D007733 ORTHO05D009786 2.8e-12 74.7 41 75.6
SalBow7G0067 Salvia bowleyana HOM05D007733 ORTHO05D009786 3.6e-12 74.3 45 75.6
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 1.1e-11 72.8 34 97.1
HPP92_015863 Vanilla planifolia HOM05D007733 ORTHO05D009786 8.9e-11 69.7 40 75.0
HPP92_015865 Vanilla planifolia HOM05D007733 ORTHO05D009786 8.9e-11 69.7 40 75.0
Mapoly0009s0018 Marchantia polymorpha HOM05D007733 ORTHO05D009786 4.1e-08 60.8 54 51.9
RcHm_v2.0_Chr1g0328311 Rosa chinensis HOM05D007733 ORTHO05D009786 7.1e-08 60.1 34 79.4
Gohir.A11G247151 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.2e-07 59.3 51 66.7
CBR_g21252 Chara braunii HOM05D007733 ORTHO05D009786 1.7e-06 55.5 53 47.2


User provided reference genes

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