Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 9.8e-90 333.6 184 100.0
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 3.4e-66 255.4 164 79.9
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 2.1e-47 193.0 166 73.5
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 9.0e-35 151.0 148 64.2
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 5.9e-18 95.1 146 45.2
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 2.2e-17 93.2 157 40.1
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 1.9e-16 90.1 121 52.9
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.1e-15 86.7 149 44.3
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 6.1e-15 85.1 137 41.6
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 7.9e-15 84.7 137 54.0
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 1.8e-14 83.6 155 38.1
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 2.3e-14 83.2 174 37.4
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 2.3e-14 83.2 161 39.8
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 3.0e-14 82.8 147 40.8
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.5e-13 80.5 69 62.3
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 1.5e-13 80.5 152 42.8
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 3.3e-13 79.3 168 44.0
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.7e-13 78.6 134 43.3
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 5.7e-13 78.6 163 39.9
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 7.4e-13 78.2 104 43.3
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 7.4e-13 78.2 70 62.9
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 1.3e-12 77.4 178 37.6
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 2.8e-12 76.3 132 40.9
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 2.8e-12 76.3 55 72.7
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 4.8e-12 75.5 155 38.7
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 6.3e-12 75.1 133 38.3
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 8.2e-12 74.7 110 41.8
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 8.2e-12 74.7 71 62.0
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 8.2e-12 74.7 130 40.0
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 1.4e-11 73.9 163 35.6
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.4e-11 73.9 83 54.2
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.8e-11 73.6 154 37.0
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 1.8e-11 73.6 146 42.5
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.1e-11 72.8 139 38.1
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 3.1e-11 72.8 144 34.7
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 5.3e-11 72.0 127 40.2
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 5.3e-11 72.0 75 56.0
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 5.3e-11 72.0 132 40.2
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 1.2e-10 70.9 152 38.8
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 1.6e-10 70.5 127 40.9
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.6e-10 69.7 140 40.7
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 3.5e-10 69.3 76 57.9
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.5e-10 69.3 139 37.4
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 3.5e-10 69.3 149 40.3
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 5.9e-10 68.6 45 73.3
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 7.7e-10 68.2 111 39.6
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 1.0e-09 67.8 159 37.1
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 1.3e-09 67.4 132 35.6
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 1.7e-09 67.0 61 60.7
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.7e-09 67.0 59 61.0
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 2.9e-09 66.2 81 50.6
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.9e-09 66.2 48 72.9
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 3.8e-09 65.9 137 35.0
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 5.0e-09 65.5 47 72.3
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.0e-09 65.5 81 53.1
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 6.5e-09 65.1 53 66.0
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 6.5e-09 65.1 147 43.5
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 6.5e-09 65.1 50 74.0
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 1.9e-08 63.5 71 57.7
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.9e-08 63.5 68 54.4
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 2.5e-08 63.2 49 69.4
Sabra06G0026200 Salix brachista HOM05D002974 ORTHO05D002992 2.5e-08 63.2 118 48.3
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.2e-08 62.8 81 50.6
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 3.2e-08 62.8 50 68.0
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 3.2e-08 62.8 47 68.1
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.2e-08 62.4 81 51.9
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 5.5e-08 62.0 66 57.6
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 7.2e-08 61.6 144 31.2
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 7.2e-08 61.6 70 50.0
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 7.2e-08 61.6 53 62.3
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 7.2e-08 61.6 81 50.6
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 7.2e-08 61.6 53 64.2
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 9.4e-08 61.2 140 34.3
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 9.4e-08 61.2 140 35.0
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 9.4e-08 61.2 50 68.0
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 9.4e-08 61.2 53 62.3
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 1.2e-07 60.8 131 39.7
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 1.2e-07 60.8 81 51.9
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 1.2e-07 60.8 47 66.0
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 1.6e-07 60.5 68 57.4
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 1.6e-07 60.5 130 38.5
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 1.6e-07 60.5 68 57.4
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 1.6e-07 60.5 130 38.5
Migut.J01657 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.6e-07 60.5 122 32.8
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 2.1e-07 60.1 78 51.3
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 2.1e-07 60.1 144 34.7
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 2.1e-07 60.1 81 50.6
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 2.1e-07 60.1 64 50.0
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.1e-07 60.1 53 66.0
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 2.7e-07 59.7 48 68.8
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.7e-07 59.7 45 66.7
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 2.7e-07 59.7 56 64.3
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 3.6e-07 59.3 66 50.0
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.6e-07 59.3 43 69.8
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 3.6e-07 59.3 118 35.6
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 3.6e-07 59.3 47 66.0
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 3.6e-07 59.3 47 66.0
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 4.7e-07 58.9 78 50.0
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 4.7e-07 58.9 83 47.0
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 6.1e-07 58.5 44 68.2
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 6.1e-07 58.5 68 51.5
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 6.1e-07 58.5 128 36.7
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 6.1e-07 58.5 42 71.4
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 6.1e-07 58.5 62 50.0
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 8.0e-07 58.2 59 55.9
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 8.0e-07 58.2 74 51.4
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 8.0e-07 58.2 74 51.4
CDE09G1110 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 8.0e-07 58.2 82 41.5
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 8.0e-07 58.2 136 34.6
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 8.0e-07 58.2 44 70.5
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 8.0e-07 58.2 68 51.5
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 1.0e-06 57.8 56 60.7
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 1.0e-06 57.8 132 37.1
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 1.0e-06 57.8 64 59.4
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 1.0e-06 57.8 66 56.1
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 1.0e-06 57.8 130 37.7
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 1.0e-06 57.8 130 37.7
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.0e-06 57.8 73 49.3
CsaV3_3G040160 Cucumis sativus L. HOM05D002974 ORTHO05D002992 1.0e-06 57.8 37 70.3
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.4e-06 57.4 171 33.3
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 1.4e-06 57.4 69 49.3
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 1.4e-06 57.4 55 54.5
SalBow1G0087 Salvia bowleyana HOM05D064831 ORTHO05D002992 1.4e-06 57.4 49 67.3
SalBow1G1187 Salvia bowleyana HOM05D064831 ORTHO05D002992 1.4e-06 57.4 49 67.3
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.4e-06 57.4 48 68.8
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.4e-06 57.4 129 38.8
HPP92_028460 Vanilla planifolia HOM05D002974 ORTHO05D002992 1.4e-06 57.4 63 54.0
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 1.8e-06 57.0 82 47.6
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.8e-06 57.0 122 36.9
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 1.8e-06 57.0 48 58.3
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 1.8e-06 57.0 68 51.5
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 1.8e-06 57.0 47 63.8
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 1.8e-06 57.0 44 68.2
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 1.8e-06 57.0 44 68.2
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 2.3e-06 56.6 86 48.8
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.3e-06 56.6 41 70.7
unitig_748.g7224 Utricularia gibba HOM05D002974 ORTHO05D002992 2.3e-06 56.6 49 61.2
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 3.0e-06 56.2 65 55.4
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 3.0e-06 56.2 62 50.0
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 3.0e-06 56.2 65 55.4
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 3.0e-06 56.2 52 65.4
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 4.0e-06 55.8 86 47.7
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 4.0e-06 55.8 45 68.9
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.0e-06 55.8 52 63.5
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 4.0e-06 55.8 46 69.6
SGA_v2.0_scaffold69G23150 Striga asiatica HOM05D002974 ORTHO05D002992 4.0e-06 55.8 69 49.3
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 5.2e-06 55.5 71 47.9
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 5.2e-06 55.5 71 47.9
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.2e-06 55.5 52 63.5
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.2e-06 55.5 52 63.5
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 5.2e-06 55.5 52 55.8
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 6.7e-06 55.1 51 66.7
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 6.7e-06 55.1 52 63.5
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.7e-06 55.1 52 63.5
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.7e-06 55.1 58 56.9
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 8.8e-06 54.7 49 63.3
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 8.8e-06 54.7 63 54.0
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 8.8e-06 54.7 87 43.7


User provided reference genes

Program Settings