Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 2.9e-79 298.5 150 100.0
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 5.6e-75 284.3 149 94.6
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 4.1e-70 268.1 150 88.7
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 2.3e-60 235.7 133 85.0
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.1e-42 176.0 126 69.0
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 4.8e-42 174.9 125 67.2
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.8e-42 174.9 125 67.2
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.8e-42 174.9 125 67.2
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.1e-41 173.7 126 66.7
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.4e-41 173.3 122 68.0
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 5.3e-41 171.4 125 66.4
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 6.9e-41 171.0 126 63.5
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.0e-41 170.6 125 66.4
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-40 170.2 125 65.6
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 1.2e-40 170.2 123 63.4
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.2e-40 170.2 136 60.3
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.5e-40 169.9 125 66.4
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 2.6e-40 169.1 137 58.4
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 4.5e-40 168.3 125 63.2
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 5.8e-40 167.9 137 58.4
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 5.8e-40 167.9 122 67.2
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 7.6e-40 167.5 125 64.8
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 7.6e-40 167.5 138 61.6
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.9e-40 167.2 127 64.6
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 9.9e-40 167.2 122 63.9
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 9.9e-40 167.2 127 62.2
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.3e-39 166.8 127 63.8
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.7e-39 166.4 126 64.3
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 2.2e-39 166.0 136 62.5
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.2e-39 166.0 127 64.6
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 2.9e-39 165.6 130 63.8
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 2.9e-39 165.6 128 63.3
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 2.9e-39 165.6 126 61.9
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.9e-39 165.6 138 60.9
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 3.8e-39 165.2 127 60.6
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 3.8e-39 165.2 125 63.2
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.8e-39 165.2 130 61.5
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 3.8e-39 165.2 124 63.7
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 4.9e-39 164.9 125 61.6
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 6.4e-39 164.5 126 59.5
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 6.4e-39 164.5 127 63.0
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 6.4e-39 164.5 127 64.6
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 6.4e-39 164.5 127 64.6
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 6.4e-39 164.5 124 63.7
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 8.4e-39 164.1 125 60.0
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 8.4e-39 164.1 122 62.3
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.4e-38 163.3 125 65.6
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 1.9e-38 162.9 120 63.3
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.9e-38 162.9 139 57.6
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 2.4e-38 162.5 121 65.3
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 3.2e-38 162.2 126 62.7
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 4.2e-38 161.8 126 61.9
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 4.2e-38 161.8 128 61.7
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 5.4e-38 161.4 125 60.8
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 5.4e-38 161.4 126 61.1
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 9.3e-38 160.6 124 59.7
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 9.3e-38 160.6 118 62.7
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 9.3e-38 160.6 126 59.5
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 1.2e-37 160.2 127 59.8
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 1.2e-37 160.2 120 62.5
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.6e-37 159.8 123 62.6
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.1e-37 159.5 125 60.8
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.1e-37 159.5 127 59.1
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 2.7e-37 159.1 123 61.8
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 2.7e-37 159.1 121 64.5
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 4.6e-37 158.3 126 60.3
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 4.6e-37 158.3 126 61.1
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 4.6e-37 158.3 120 65.0
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 6.0e-37 157.9 125 60.0
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 6.0e-37 157.9 125 62.4
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 7.9e-37 157.5 121 61.2
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 1.0e-36 157.1 126 58.7
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 2.3e-36 156.0 125 63.2
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 3.0e-36 155.6 124 58.9
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 5.1e-36 154.8 118 61.9
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 5.1e-36 154.8 128 58.6
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 6.7e-36 154.5 121 58.7
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 8.7e-36 154.1 118 59.3
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 1.1e-35 153.7 123 60.2
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.1e-35 153.7 122 60.7
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.1e-35 153.7 118 60.2
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 1.9e-35 152.9 131 56.5
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 4.3e-35 151.8 116 62.1
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 7.4e-35 151.0 118 58.5
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 7.4e-35 151.0 122 57.4
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 1.3e-34 150.2 118 59.3
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.6e-34 149.8 120 60.8
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 2.8e-34 149.1 122 56.6
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 3.7e-34 148.7 131 55.0
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 3.7e-34 148.7 131 55.0
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 3.7e-34 148.7 131 55.0
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 8.1e-34 147.5 118 57.6
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 8.1e-34 147.5 118 58.5
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 1.1e-33 147.1 123 53.7
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.1e-33 147.1 123 52.8
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 1.1e-33 147.1 126 53.2
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.4e-33 146.7 121 57.9
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.8e-33 146.4 116 58.6
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.8e-33 146.4 118 58.5
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 2.4e-33 146.0 120 56.7
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 2.4e-33 146.0 121 57.0
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 3.1e-33 145.6 118 59.3
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 4.0e-33 145.2 123 54.5
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 5.3e-33 144.8 118 56.8
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 6.9e-33 144.4 118 57.6
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 6.9e-33 144.4 119 58.0
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 6.9e-33 144.4 135 52.6
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 1.5e-32 143.3 118 54.2
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.5e-32 143.3 118 55.9
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.5e-32 143.3 119 56.3
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 2.0e-32 142.9 122 55.7
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 2.0e-32 142.9 125 49.6
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 3.4e-32 142.1 131 53.4
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.4e-32 142.1 118 61.0
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 7.6e-32 141.0 119 58.0
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 1.3e-31 140.2 122 56.6
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 2.9e-31 139.0 123 48.8
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 2.9e-31 139.0 119 52.9
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 4.9e-31 138.3 131 50.4
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 6.4e-31 137.9 131 51.9
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 6.4e-31 137.9 131 51.9
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 6.4e-31 137.9 118 55.9
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 8.4e-31 137.5 119 55.5
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 1.1e-30 137.1 129 51.9
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.4e-30 136.7 119 53.8
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 1.4e-30 136.7 118 55.9
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.9e-30 136.3 105 58.1
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 3.2e-30 135.6 122 54.9
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.2e-30 135.6 117 56.4
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 3.2e-30 135.6 136 49.3
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 4.2e-30 135.2 129 50.4
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 4.2e-30 135.2 129 50.4
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 4.2e-30 135.2 118 54.2
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 5.5e-30 134.8 129 51.2
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 9.3e-30 134.0 126 50.0
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 9.3e-30 134.0 119 52.1
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 9.3e-30 134.0 120 51.7
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 9.3e-30 134.0 116 54.3
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 1.2e-29 133.7 119 52.9
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.6e-29 133.3 119 53.8
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.1e-29 132.9 126 50.0
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 2.1e-29 132.9 116 55.2
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 2.7e-29 132.5 122 54.1
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 2.7e-29 132.5 119 56.3
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.5e-29 132.1 119 56.3
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 4.6e-29 131.7 108 60.2
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 6.0e-29 131.3 122 53.3
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 7.9e-29 131.0 120 53.3
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.0e-28 130.6 119 52.9
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 3.0e-28 129.0 120 52.5
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 5.1e-28 128.3 123 48.0
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 5.6e-27 124.8 119 47.1
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 4.8e-26 121.7 119 55.5
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 4.0e-25 118.6 100 55.0
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 5.3e-25 118.2 128 43.0
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 4.9e-23 111.7 118 45.8
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 8.4e-23 110.9 133 44.4
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.3e-19 98.6 62 69.4
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 2.8e-18 95.9 79 58.2
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 6.3e-18 94.7 66 66.7
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 8.5e-15 84.3 67 56.7
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.2e-14 82.4 122 35.2
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 3.2e-14 82.4 54 66.7
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.7e-13 79.3 52 69.2
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.6e-13 79.0 81 58.0
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 7.9e-13 77.8 112 35.7
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.4e-12 77.0 63 60.3
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 3.3e-11 72.4 65 52.3
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 7.4e-11 71.2 76 48.7
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 7.4e-11 71.2 62 54.8
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.4e-09 66.2 64 46.9
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.4e-09 66.2 64 46.9
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 4.1e-09 65.5 62 51.6
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 5.9e-08 61.6 65 52.3
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 5.5e-06 55.1 59 47.5


User provided reference genes

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