Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 5.0e-160 567.8 298 100.0
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 3.6e-158 561.6 298 98.7
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 6.1e-158 560.8 298 98.7
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 2.5e-151 538.9 327 88.7
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 5.2e-149 531.2 298 93.0
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 1.1e-127 460.3 294 81.0
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 9.5e-127 457.2 294 81.0
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 3.6e-126 455.3 300 79.7
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.4e-125 453.4 304 78.6
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.3e-125 452.6 300 79.3
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 3.1e-125 452.2 301 78.7
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 5.2e-125 451.4 303 77.6
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 1.2e-124 450.3 298 78.2
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.4e-124 448.7 298 77.9
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.4e-124 448.7 298 77.9
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 3.4e-124 448.7 298 77.9
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 4.4e-124 448.4 297 79.8
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 7.6e-124 447.6 298 77.5
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.3e-123 446.8 300 77.7
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 2.2e-123 446.0 294 80.3
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 2.9e-123 445.7 300 79.0
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 2.9e-123 445.7 302 77.5
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 1.1e-122 443.7 298 78.2
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 1.4e-122 443.4 301 77.7
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 2.4e-122 442.6 306 76.8
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 7.1e-122 441.0 301 77.4
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 9.2e-122 440.7 288 78.8
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 1.6e-121 439.9 301 77.1
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 2.1e-121 439.5 322 71.7
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 7.8e-121 437.6 306 75.2
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 1.0e-120 437.2 330 72.4
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.0e-120 437.2 300 76.7
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 1.7e-120 436.4 291 78.0
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 2.3e-120 436.0 291 78.0
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 3.0e-120 435.6 293 76.5
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 3.0e-120 435.6 293 76.5
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 3.0e-120 435.6 306 75.2
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 3.0e-120 435.6 296 77.7
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 3.9e-120 435.3 302 76.2
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 6.6e-120 434.5 301 75.7
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 6.6e-120 434.5 276 80.8
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 1.5e-119 433.3 289 76.8
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.9e-119 433.0 301 75.7
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 7.3e-119 431.0 278 79.5
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 7.3e-119 431.0 298 77.2
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 9.6e-119 430.6 286 78.0
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 1.2e-118 430.3 294 75.9
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 1.6e-118 429.9 298 75.2
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.6e-118 429.9 298 75.2
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 2.8e-118 429.1 280 79.3
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 6.2e-118 427.9 287 76.7
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 8.1e-118 427.6 293 77.1
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 1.4e-117 426.8 301 72.8
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 1.8e-117 426.4 301 72.8
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 2.4e-117 426.0 301 74.4
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 2.4e-117 426.0 276 79.3
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 4.0e-117 425.2 291 76.6
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 5.2e-117 424.9 295 74.9
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 8.9e-117 424.1 286 75.9
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 1.5e-116 423.3 287 76.7
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.0e-116 422.9 265 81.9
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 2.6e-116 422.5 283 77.7
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 2.6e-116 422.5 297 73.4
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 2.6e-116 422.5 297 73.4
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 3.4e-116 422.2 287 76.0
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 3.4e-116 422.2 288 75.0
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.4e-116 421.8 266 81.2
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.4e-116 421.8 265 81.9
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 5.8e-116 421.4 301 72.1
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 5.8e-116 421.4 284 76.8
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.8e-116 421.4 267 81.3
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 7.6e-116 421.0 295 73.6
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 1.3e-115 420.2 297 76.4
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 1.3e-115 420.2 284 76.8
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 2.2e-115 419.5 296 74.7
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 2.9e-115 419.1 298 73.2
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 2.9e-115 419.1 294 74.1
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 2.9e-115 419.1 283 75.3
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 4.9e-115 418.3 286 77.6
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 4.9e-115 418.3 282 76.6
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 4.9e-115 418.3 301 73.1
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 6.4e-115 417.9 297 76.1
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 8.4e-115 417.5 296 74.3
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 8.4e-115 417.5 278 77.3
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 8.4e-115 417.5 278 77.3
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 8.4e-115 417.5 290 74.1
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 8.4e-115 417.5 283 76.3
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 8.4e-115 417.5 316 72.8
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 1.1e-114 417.2 296 74.3
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 1.1e-114 417.2 277 78.3
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 4.2e-114 415.2 278 77.0
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 4.2e-114 415.2 298 73.5
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 5.4e-114 414.8 287 77.7
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 5.4e-114 414.8 303 71.0
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 5.4e-114 414.8 301 74.4
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 1.2e-113 413.7 283 78.1
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 1.2e-113 413.7 297 74.4
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.6e-113 413.3 296 75.0
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 1.6e-113 413.3 292 76.0
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 2.7e-113 412.5 297 74.7
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 4.6e-113 411.8 297 75.4
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 6.0e-113 411.4 303 71.0
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 3.9e-112 408.7 351 64.1
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 5.1e-112 408.3 302 72.5
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 2.5e-111 406.0 298 72.1
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 2.5e-111 406.0 280 74.6
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 3.3e-111 405.6 292 71.2
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 1.6e-110 403.3 301 71.8
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.6e-110 402.1 266 79.3
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 6.2e-110 401.4 350 63.4
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 9.0e-109 397.5 284 74.3
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 4.2e-106 388.7 299 67.9
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.4e-103 377.9 265 76.6
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.3e-102 377.1 276 70.3
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 2.8e-102 375.9 278 69.8
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 6.2e-102 374.8 300 66.0
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 9.0e-101 370.9 310 64.5
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-100 370.5 231 81.0
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.4e-98 363.6 301 65.8
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 3.2e-98 362.5 302 65.6
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 9.3e-98 360.9 302 65.2
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 4.6e-97 358.6 276 67.8
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 4.6e-97 358.6 258 71.7
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 3.9e-96 355.5 298 64.4
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 6.7e-96 354.8 297 64.3
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 8.7e-96 354.4 289 62.3
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 3.3e-95 352.4 212 84.9
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 3.7e-94 349.0 276 63.0
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 1.2e-92 344.0 276 63.0
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 1.1e-87 327.4 291 56.4
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 1.4e-85 320.5 293 62.8
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 6.1e-81 305.1 223 73.5
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 7.9e-81 304.7 267 63.3
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 3.3e-79 299.3 303 55.4
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 1.4e-77 293.9 291 52.6
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 3.0e-72 276.2 220 65.9
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 2.8e-70 269.6 163 81.0
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 3.7e-70 269.2 202 68.3
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 4.5e-68 262.3 252 57.9
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 1.7e-67 260.4 275 52.4
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 1.2e-60 237.7 199 67.8
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.9e-58 230.3 163 72.4
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 1.9e-58 230.3 245 47.3
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 5.0e-43 179.1 169 62.7
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 9.5e-42 174.9 176 57.4
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 9.5e-42 174.9 176 57.4
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 8.3e-38 161.8 105 77.1
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 8.3e-38 161.8 105 77.1
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 6.8e-32 142.1 95 76.8
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 3.4e-31 139.8 81 85.2
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 1.3e-30 137.9 144 54.9
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 4.9e-30 136.0 114 60.5
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 4.9e-22 109.4 85 61.2
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 1.3e-19 101.3 98 58.2
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 1.5e-15 87.8 76 55.3
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 2.0e-15 87.4 76 55.3
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 3.4e-15 86.7 52 86.5
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 4.4e-15 86.3 58 75.9
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 1.3e-14 84.7 81 50.6
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 4.9e-14 82.8 90 51.1
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 3.2e-13 80.1 70 65.7
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 5.4e-13 79.3 82 48.8
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 5.4e-13 79.3 76 52.6
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 7.1e-13 79.0 68 63.2
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 2.7e-12 77.0 68 63.2
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 3.9e-11 73.2 58 60.3
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 6.2e-09 65.9 40 80.0
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 4.0e-08 63.2 39 79.5
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 4.0e-08 63.2 39 79.5
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 3.4e-07 60.1 105 41.0


User provided reference genes

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