Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 5.3e-148 527.7 277 100.0
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 9.1e-148 526.9 277 99.3
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 1.1e-145 520.0 277 97.8
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 1.7e-138 496.1 277 93.5
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 4.4e-134 481.5 276 90.6
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 1.5e-121 439.9 274 81.0
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.6e-120 436.4 274 81.4
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 3.6e-120 435.3 274 81.0
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 6.2e-120 434.5 277 80.1
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 1.0e-119 433.7 274 80.3
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.8e-119 433.0 277 79.8
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.3e-119 432.6 274 80.7
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.3e-119 432.6 274 80.7
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 3.1e-119 432.2 274 79.9
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 4.0e-119 431.8 273 80.6
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 5.2e-119 431.4 274 80.7
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 6.8e-119 431.0 273 80.6
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 8.9e-119 430.6 274 80.3
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 2.0e-118 429.5 274 80.3
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 2.6e-118 429.1 274 79.9
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 5.8e-118 427.9 274 79.9
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 9.8e-118 427.2 274 79.2
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 9.8e-118 427.2 274 79.6
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 9.8e-118 427.2 274 79.9
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.3e-117 426.8 274 79.2
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 2.2e-117 426.0 274 78.5
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 2.2e-117 426.0 277 79.1
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 1.1e-116 423.7 274 79.2
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 1.1e-116 423.7 274 78.8
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 1.4e-116 423.3 274 78.5
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.4e-116 423.3 274 78.5
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.4e-116 423.3 274 78.1
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 3.2e-116 422.2 274 77.7
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 7.0e-116 421.0 274 78.1
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 7.0e-116 421.0 274 78.1
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 9.2e-116 420.6 285 77.5
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.2e-115 420.2 274 77.4
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.6e-115 419.9 274 76.3
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 2.7e-115 419.1 274 78.5
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 3.5e-115 418.7 274 76.6
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 6.0e-115 417.9 274 77.7
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 7.8e-115 417.5 275 78.2
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.3e-114 416.8 277 76.5
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 3.9e-114 415.2 277 75.8
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 8.6e-114 414.1 271 78.2
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.1e-113 413.7 274 77.4
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 2.5e-113 412.5 274 76.6
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 3.3e-113 412.1 277 75.1
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 7.3e-113 411.0 272 76.5
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 7.3e-113 411.0 273 78.0
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.6e-112 409.8 276 75.4
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 2.8e-112 409.1 272 77.9
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 3.6e-112 408.7 274 77.4
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 6.2e-112 407.9 270 77.0
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 6.2e-112 407.9 273 76.2
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 1.1e-111 407.1 274 75.9
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 3.1e-111 405.6 274 76.3
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 3.1e-111 405.6 274 76.3
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 4.0e-111 405.2 274 75.9
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 4.0e-111 405.2 272 77.6
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 5.2e-111 404.8 272 76.8
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 6.8e-111 404.4 274 75.5
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 8.9e-111 404.1 272 76.1
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 1.5e-110 403.3 272 77.2
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 1.5e-110 403.3 274 75.2
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.0e-110 402.9 274 75.5
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 2.0e-110 402.9 304 70.4
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 2.0e-110 402.9 274 75.2
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 2.0e-110 402.9 272 75.4
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 2.6e-110 402.5 274 75.2
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 3.4e-110 402.1 274 75.5
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 3.4e-110 402.1 278 75.2
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 4.4e-110 401.7 274 75.2
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 4.4e-110 401.7 272 75.4
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 4.4e-110 401.7 272 75.4
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 5.8e-110 401.4 274 74.8
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 5.8e-110 401.4 272 75.7
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.3e-109 400.2 273 75.1
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 1.3e-109 400.2 272 75.7
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 2.2e-109 399.4 274 74.8
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 3.7e-109 398.7 270 77.4
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 4.1e-108 395.2 274 75.2
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 7.1e-108 394.4 283 73.1
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 2.7e-107 392.5 274 74.8
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 2.7e-107 392.5 274 74.8
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 2.7e-107 392.5 274 74.8
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 4.6e-107 391.7 275 74.2
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 6.0e-107 391.3 274 74.8
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 6.0e-107 391.3 290 71.0
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 1.3e-106 390.2 274 74.1
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 8.6e-106 387.5 278 73.7
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 8.6e-106 387.5 274 72.6
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.9e-105 386.3 270 75.2
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 4.3e-105 385.2 266 74.4
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.1e-104 382.9 270 75.2
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 5.2e-103 378.3 316 64.9
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 3.4e-102 375.6 269 71.7
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.9e-101 372.5 274 73.4
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 2.9e-101 372.5 269 71.4
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 1.1e-100 370.5 274 69.7
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 7.1e-100 367.9 288 68.1
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 7.1e-100 367.9 269 71.4
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 3.5e-99 365.5 333 61.3
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.6e-99 365.2 272 69.1
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 2.3e-98 362.8 269 69.9
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 3.9e-98 362.1 369 56.9
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 6.6e-98 361.3 270 69.6
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 8.6e-98 360.9 268 67.2
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 4.7e-96 355.1 322 61.5
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 4.7e-96 355.1 248 75.4
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 8.1e-96 354.4 268 65.7
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 3.1e-95 352.4 257 70.8
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 2.2e-93 346.3 271 66.8
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 2.3e-90 336.3 263 66.5
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 6.6e-90 334.7 272 60.7
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.6e-88 330.1 211 80.1
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 3.6e-88 328.9 273 61.2
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 1.5e-86 323.6 266 63.5
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 4.9e-85 318.5 253 66.8
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.1e-83 313.2 488 43.0
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 6.0e-83 311.6 488 42.8
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 3.0e-82 309.3 253 66.4
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 4.3e-81 305.4 280 60.4
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 7.4e-81 304.7 256 65.6
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 9.6e-81 304.3 257 65.8
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-80 303.9 280 60.4
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 2.4e-79 299.7 266 59.8
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 2.4e-79 299.7 263 60.1
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 3.4e-78 295.8 280 59.3
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 7.6e-78 294.7 280 59.6
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 7.6e-78 294.7 280 60.0
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 4.9e-77 292.0 263 58.6
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 5.5e-76 288.5 263 57.8
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 3.0e-74 282.7 263 57.4
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 4.3e-73 278.9 261 62.1
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 9.0e-71 271.2 277 53.1
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 3.4e-70 269.2 297 56.2
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-69 266.5 226 64.6
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 1.9e-68 263.5 281 55.9
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.9e-68 263.5 161 79.5
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-67 260.8 254 58.3
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 1.2e-67 260.8 264 53.0
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 1.3e-61 240.7 264 50.8
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 4.8e-56 222.2 137 80.3
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 8.2e-56 221.5 252 51.2
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.4e-55 219.9 274 49.3
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 5.9e-54 215.3 267 50.2
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 8.5e-53 211.5 129 84.5
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 5.3e-47 192.2 138 71.7
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 2.5e-44 183.3 130 73.1
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 5.5e-44 182.2 412 35.4
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 6.7e-42 175.3 148 62.2
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 8.8e-42 174.9 161 61.5
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 3.3e-41 172.9 136 62.5
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 6.3e-40 168.7 218 47.7
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.3e-37 161.0 96 83.3
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.1e-36 157.9 131 62.6
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.0e-34 149.8 121 65.3
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 1.0e-29 134.8 262 35.1
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 1.9e-28 130.6 264 33.0
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 4.2e-28 129.4 139 53.2
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.2e-27 127.9 141 49.6
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.7e-24 117.5 290 28.3
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 2.7e-22 110.2 70 81.4
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 6.5e-21 105.5 150 45.3
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 1.8e-18 97.4 111 53.2
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 2.3e-18 97.1 68 72.1
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 8.8e-18 95.1 83 56.6
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.6e-17 93.6 72 61.1
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.6e-17 93.6 72 61.1
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 4.4e-17 92.8 69 66.7
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.3e-16 91.3 72 59.7
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.7e-16 89.7 72 59.7
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-15 88.2 52 84.6
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-15 87.8 52 82.7
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-15 87.8 52 82.7
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-15 87.8 52 82.7
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.4e-15 87.8 59 72.9
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 2.4e-15 87.0 72 61.1
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 3.1e-15 86.7 52 82.7
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 5.9e-14 82.4 50 80.0
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 1.0e-13 81.6 53 73.6
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 8.6e-13 78.6 68 63.2
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 4.4e-09 66.2 52 59.6
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.8e-07 60.8 40 75.0
HanXRQChr08g0208641 Helianthus annuus HOM05D003833 ORTHO05D004209 1.6e-06 57.8 103 38.8


User provided reference genes

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