Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019005.2 Cucumis melo HOM05D000860 ORTHO05D006064 1.0e-23 112.5 54 100.0
CsaV3_7G003950 Cucumis sativus L. HOM05D000860 ORTHO05D006064 2.6e-22 107.8 53 94.3
MELO3C029958.2 Cucumis melo HOM05D000860 ORTHO05D006064 3.4e-22 107.5 53 94.3
MELO3C004860.2 Cucumis melo HOM05D000860 ORTHO05D006064 9.8e-22 105.9 53 92.5
MELO3C008658.2 Cucumis melo HOM05D000860 ORTHO05D006064 9.8e-22 105.9 53 94.3
MELO3C027253.2 Cucumis melo HOM05D000860 ORTHO05D006064 9.8e-22 105.9 53 92.5
MELO3C027993.2 Cucumis melo HOM05D000860 ORTHO05D006064 9.8e-22 105.9 53 94.3
ClCG02G001460 Citrullus lanatus HOM05D000860 ORTHO05D006064 4.8e-21 103.6 53 92.5
MELO3C025410.2 Cucumis melo HOM05D000860 ORTHO05D006064 4.8e-21 103.6 53 92.5
MELO3C000084.2 Cucumis melo HOM05D000860 ORTHO05D006064 6.3e-21 103.2 53 92.5
MELO3C012940.2 Cucumis melo HOM05D001721 ORTHO05D006064 2.4e-20 101.3 53 90.6
MELO3C000317.2 Cucumis melo HOM05D000860 ORTHO05D006064 4.1e-20 100.5 53 88.7
Sed0003367 Sechium edule HOM05D000860 ORTHO05D006064 5.4e-20 100.1 53 86.8
MELO3C029864.2 Cucumis melo HOM05D000860 ORTHO05D006064 7.0e-20 99.8 53 88.7
CANSAT64G2191 Cannabis sativa HOM05D000860 ORTHO05D006064 1.7e-18 95.1 53 81.1
TAR627G1143 Trochodendron aralioides HOM05D000860 ORTHO05D006064 1.7e-18 95.1 53 84.9
Atru.chr6.3106 Acer truncatum HOM05D000860 ORTHO05D006064 2.3e-18 94.7 52 86.5
PGR042G0516 Punica granatum HOM05D000860 ORTHO05D006064 3.8e-18 94.0 52 82.7
Eucgr.A01742 Eucalyptus grandis HOM05D000860 ORTHO05D006064 5.0e-18 93.6 53 84.9
MELO3C027870.2 Cucumis melo HOM05D000860 ORTHO05D006064 8.6e-18 92.8 48 89.6
QL01p000412 Quercus lobata HOM05D000860 ORTHO05D006064 1.5e-17 92.0 53 75.5
Rhsim06G0154700 Rhododendron simsii HOM05D000860 ORTHO05D006064 1.9e-17 91.7 52 80.8
Aqoxy1G03983 Aquilegia oxysepala HOM05D000860 ORTHO05D006064 2.5e-17 91.3 52 80.8
Ciclev10016548m.g Citrus clementina HOM05D000860 ORTHO05D006064 3.3e-17 90.9 53 81.1
Dinv10889 Davidia involucrata HOM05D000860 ORTHO05D006064 3.3e-17 90.9 53 79.2
Dinv13864 Davidia involucrata HOM05D000860 ORTHO05D006064 3.3e-17 90.9 53 79.2
Lj8E120T0 Lonicera japonica HOM05D000860 ORTHO05D006064 3.3e-17 90.9 53 81.1
PSO017G4595 Papaver somniferum HOM05D000860 ORTHO05D006064 3.3e-17 90.9 52 80.8
Carub.0007s1411 Capsella rubella HOM05D000860 ORTHO05D006064 4.2e-17 90.5 52 80.8
MD09G1127700 Malus domestica HOM05D000860 ORTHO05D006064 4.2e-17 90.5 53 73.6
Prupe.3G223700 Prunus persica HOM05D000860 ORTHO05D006064 4.2e-17 90.5 53 73.6
FAN05G0414 Fragaria x ananassa HOM05D000860 ORTHO05D006064 9.5e-17 89.4 53 77.4
FAN05G2158 Fragaria x ananassa HOM05D000860 ORTHO05D006064 9.5e-17 89.4 53 77.4
FAN09G3393 Fragaria x ananassa HOM05D000860 ORTHO05D006064 9.5e-17 89.4 53 77.4
AT2G16030 Arabidopsis thaliana HOM05D000860 ORTHO05D006064 1.2e-16 89.0 52 80.8
CiPaw.04G120200 Carya illinoinensis HOM05D000860 ORTHO05D006064 1.2e-16 89.0 53 71.7
MD09G1102000 Malus domestica HOM05D000860 ORTHO05D006064 1.2e-16 89.0 53 71.7
Cpa.g.sc34.49 Carica papaya HOM05D000860 ORTHO05D006064 1.6e-16 88.6 53 73.6
Lj3g0007411 Lotus japonicus HOM05D000860 ORTHO05D006064 1.6e-16 88.6 52 78.8
AL7G26100 Arabidopsis lyrata HOM05D000860 ORTHO05D006064 2.1e-16 88.2 52 80.8
AT4G26730 Arabidopsis thaliana HOM05D000860 ORTHO05D006064 2.1e-16 88.2 52 78.8
Sp7g24690 Schrenkiella parvula HOM05D000860 ORTHO05D006064 2.1e-16 88.2 52 80.8
Thhalv10027187m.g Eutrema salsugineum HOM05D000860 ORTHO05D006064 2.8e-16 87.8 52 78.8
MBI02_g37279_MAGBIO Magnolia biondii HOM05D000860 ORTHO05D006064 3.6e-16 87.4 52 76.9
CARHR234350 Cardamine hirsuta HOM05D000860 ORTHO05D006064 4.7e-16 87.0 52 76.9
Hma1.2p1_0712F.1_g207590 Hydrangea macrophylla HOM05D000860 ORTHO05D006064 4.7e-16 87.0 53 75.5
RcHm_v2.0_Chr2g0160701 Rosa chinensis HOM05D000860 ORTHO05D006064 4.7e-16 87.0 53 75.5
Duzib116G0686 Durio zibethinus HOM05D000860 ORTHO05D006064 6.1e-16 86.7 52 75.0
Lalb_Chr19g0135621 Lupinus albus HOM05D000860 ORTHO05D006064 6.1e-16 86.7 53 73.6
Cfa014481 Carpinus fangiana HOM05D000860 ORTHO05D006064 1.0e-15 85.9 53 73.6
Haze_12996 Corylus avellana HOM05D000860 ORTHO05D006064 1.0e-15 85.9 53 73.6
BcaC06g32732 Brassica carinata HOM05D000860 ORTHO05D006064 1.4e-15 85.5 52 75.0
Gohir.A03G029000 Gossypium hirsutum HOM05D000860 ORTHO05D006064 1.4e-15 85.5 52 73.1
Gorai.003G146300 Gossypium raimondii HOM05D000860 ORTHO05D006064 1.4e-15 85.5 52 73.1
Nitab4.5_0000291g0080 Nicotiana tabacum HOM05D000860 ORTHO05D006064 1.4e-15 85.5 52 71.2
Gohir.D03G139600 Gossypium hirsutum HOM05D000860 ORTHO05D006064 1.8e-15 85.1 52 73.1
ECA233G6248 Erigeron canadensis HOM05D000860 ORTHO05D006064 2.3e-15 84.7 52 71.2
Nitab4.5_0007512g0030 Nicotiana tabacum HOM05D000860 ORTHO05D006064 2.3e-15 84.7 52 73.1
Thecc.08G153000 Theobroma cacao HOM05D000860 ORTHO05D006064 2.3e-15 84.7 52 73.1
CDE02G4720 Ceratophyllum demersum HOM05D000860 ORTHO05D006064 3.0e-15 84.3 52 75.0
Cc05_g05560 Coffea canephora HOM05D000860 ORTHO05D006064 3.0e-15 84.3 52 73.1
Psat7g163240 Pisum sativum HOM05D000860 ORTHO05D006064 3.0e-15 84.3 52 75.0
Potri.013G152100 Populus trichocarpa HOM05D000860 ORTHO05D006064 3.0e-15 84.3 52 75.0
Potri.019G125300 Populus trichocarpa HOM05D000860 ORTHO05D006064 3.0e-15 84.3 52 75.0
Sabra13G0122200 Salix brachista HOM05D000860 ORTHO05D006064 3.0e-15 84.3 52 75.0
Actinidia12480 Actinidia chinensis HOM05D000860 ORTHO05D006064 4.0e-15 84.0 52 73.1
Aa31LG5G12200 Aethionema arabicum HOM05D000860 ORTHO05D006064 4.0e-15 84.0 52 73.1
Glyma.12G103300 Glycine max HOM05D000860 ORTHO05D006064 5.2e-15 83.6 52 71.2
TWI75G0472 Tripterygium wilfordii HOM05D000860 ORTHO05D006064 5.2e-15 83.6 52 71.2
Solyc02g091600.1 Solanum lycopersicum HOM05D000860 ORTHO05D006064 6.8e-15 83.2 52 67.3
Sopen02g036220 Solanum pennellii HOM05D000860 ORTHO05D006064 6.8e-15 83.2 52 67.3
PGSC0003DMG400030659 Solanum tuberosum HOM05D000860 ORTHO05D006064 6.8e-15 83.2 52 67.3
GSVIVG01000419001 Vitis vinifera HOM05D000860 ORTHO05D006064 6.8e-15 83.2 52 71.2
HanXRQChr12g0361971 Helianthus annuus HOM05D000860 ORTHO05D006064 8.9e-15 82.8 53 71.7
Phvul.011G108000 Phaseolus vulgaris HOM05D000860 ORTHO05D006064 8.9e-15 82.8 52 71.2
COL.COLO4_08562 Corchorus olitorius HOM05D000860 ORTHO05D006064 1.2e-14 82.4 53 71.7
A03p56870 Brassica napus HOM05D000860 ORTHO05D006064 2.0e-14 81.6 52 71.2
BraA03t14755Z Brassica rapa HOM05D000860 ORTHO05D006064 2.0e-14 81.6 52 71.2
Nitab4.5_0000036g0430 Nicotiana tabacum HOM05D000860 ORTHO05D006064 2.0e-14 81.6 53 66.0
Oeu040640.1 Olea europaea HOM05D000860 ORTHO05D006064 2.6e-14 81.3 52 71.2
VMungo1127G0801 Vigna mungo HOM05D000860 ORTHO05D006064 2.6e-14 81.3 51 72.5
Manes.12G078700 Manihot esculenta HOM05D000860 ORTHO05D006064 3.4e-14 80.9 52 73.1
C07p55200 Brassica napus HOM05D000860 ORTHO05D006064 5.7e-14 80.1 52 69.2
BolC7t45993H Brassica oleracea HOM05D000860 ORTHO05D006064 7.5e-14 79.7 52 69.2
Actinidia27025 Actinidia chinensis HOM05D000860 ORTHO05D006064 9.8e-14 79.3 52 69.2
Migut.H01212 Erythranthe guttata HOM05D000860 ORTHO05D006064 9.8e-14 79.3 51 70.6
SGA_v2.0_scaffold159G37586 Striga asiatica HOM05D000860 ORTHO05D006064 9.8e-14 79.3 51 70.6
Medtr4g046723 Medicago truncatula HOM05D000860 ORTHO05D006064 1.3e-13 79.0 51 70.6
MSTRG.12291 Avicennia marina HOM05D000860 ORTHO05D006064 2.2e-13 78.2 51 70.6
EL10Ac4g09314 Beta vulgaris HOM05D000860 ORTHO05D006064 2.8e-13 77.8 53 66.0
BraA07t28260Z Brassica rapa HOM05D000860 ORTHO05D006064 2.8e-13 77.8 52 67.3
CAN.G1061.28 Capsicum annuum HOM05D000860 ORTHO05D006064 3.7e-13 77.4 51 64.7
Hund07049 Selenicereus undatus HOM05D000860 ORTHO05D006064 3.7e-13 77.4 53 66.0
Sc12g0002490 Simmondsia chinensis HOM05D000860 ORTHO05D006064 4.9e-13 77.0 53 66.0
AUR62000872 Chenopodium quinoa HOM05D000860 ORTHO05D006064 6.3e-13 76.6 53 66.0
Gohir.A05G243700 Gossypium hirsutum HOM05D000860 ORTHO05D006064 6.3e-13 76.6 52 67.3
Gohir.D05G244866 Gossypium hirsutum HOM05D000860 ORTHO05D006064 6.3e-13 76.6 52 67.3
Gorai.009G254500 Gossypium raimondii HOM05D000860 ORTHO05D006064 6.3e-13 76.6 52 67.3
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 8.3e-13 76.3 52 67.3
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 8.3e-13 76.3 52 67.3
AUR62005104 Chenopodium quinoa HOM05D000860 ORTHO05D006064 8.3e-13 76.3 53 66.0
PGSC0003DMG400010404 Solanum tuberosum HOM05D000860 ORTHO05D006064 1.1e-12 75.9 53 60.4
TPR.G19038 Trifolium pratense HOM05D000860 ORTHO05D006064 1.1e-12 75.9 43 81.4
Dinv22242 Davidia involucrata HOM05D000860 ORTHO05D006064 1.4e-12 75.5 40 82.5
SHI10287 Sapria himalayana HOM05D000860 ORTHO05D006064 1.4e-12 75.5 51 70.6
SGA_v2.0_scaffold49G18328 Striga asiatica HOM05D000860 ORTHO05D006064 2.4e-12 74.7 51 66.7
BcaNung00758 Brassica carinata HOM05D000860 ORTHO05D006064 4.1e-12 73.9 52 63.5
C01p02820 Brassica napus HOM05D000860 ORTHO05D006064 4.1e-12 73.9 52 63.5
C01p02850 Brassica napus HOM05D000860 ORTHO05D006064 4.1e-12 73.9 52 63.5
BolC1t00271H Brassica oleracea HOM05D000860 ORTHO05D006064 4.1e-12 73.9 52 63.5
BolC1t00273H Brassica oleracea HOM05D000860 ORTHO05D006064 4.1e-12 73.9 52 63.5
ATR0804G076 Amborella trichopoda HOM05D000860 ORTHO05D006064 5.4e-12 73.6 53 60.4
A07p04720 Brassica napus HOM05D000860 ORTHO05D006064 5.4e-12 73.6 47 68.1
Peaxi162Scf00703g00019 Petunia axillaris HOM05D000860 ORTHO05D006064 7.0e-12 73.2 46 65.2
DCAR_009702 Daucus carota HOM05D000860 ORTHO05D006064 9.2e-12 72.8 52 59.6
unitig_26.g9929 Utricularia gibba HOM05D000860 ORTHO05D006064 9.2e-12 72.8 51 62.7
HPP92_001790 Vanilla planifolia HOM05D000860 ORTHO05D006064 9.2e-12 72.8 51 66.7
Ah.04g159810 Amaranthus hybridus HOM05D000735 ORTHO05D000838 1.2e-11 72.4 53 62.3
HanXRQChr04g0110821 Helianthus annuus HOM05D000860 ORTHO05D006064 3.5e-11 70.9 53 60.4
Sopen02g014550 Solanum pennellii HOM05D000860 ORTHO05D006064 4.5e-11 70.5 53 56.6
Aqoxy4G01788 Aquilegia oxysepala HOM05D000860 ORTHO05D006064 1.7e-10 68.6 40 77.5
Solyc02g063460.1 Solanum lycopersicum HOM05D000860 ORTHO05D006064 2.3e-10 68.2 53 54.7
SalBow8G2571 Salvia bowleyana HOM05D000860 ORTHO05D006064 3.9e-10 67.4 50 62.0
MELO3C027700.2 Cucumis melo HOM05D000860 ORTHO05D006064 5.0e-10 67.0 32 90.6
FAN16G3168 Fragaria x ananassa HOM05D000860 ORTHO05D006064 8.6e-10 66.2 39 74.4
Os01g0785600 Oryza sativa ssp. japonica HOM05D000860 ORTHO05D006064 1.9e-09 65.1 55 60.0
SEGI_26488 Sequoiadendron giganteum HOM05D000860 ORTHO05D006064 2.5e-09 64.7 53 52.8
Peaxi162Scf00943g00045 Petunia axillaris HOM05D000860 ORTHO05D006064 3.3e-09 64.3 48 56.2
Os05g0500700 Oryza sativa ssp. japonica HOM05D000860 ORTHO05D006064 2.1e-08 61.6 55 56.4
Aqoxy2G01929 Aquilegia oxysepala HOM05D000860 ORTHO05D006064 2.8e-08 61.2 35 80.0
CAN.G236.19 Capsicum annuum HOM05D000860 ORTHO05D005354 1.0e-07 59.3 51 52.9
Zm00001eb291950 Zea mays HOM05D000860 ORTHO05D006064 1.4e-07 58.9 55 50.9
Solyc05g014120.1 Solanum lycopersicum HOM05D000860 ORTHO05D005354 1.5e-06 55.5 51 51.0
PGSC0003DMG400010735 Solanum tuberosum HOM05D000860 ORTHO05D005354 1.5e-06 55.5 51 51.0
Zm00001eb209720 Zea mays HOM05D000860 ORTHO05D006064 2.0e-06 55.1 50 52.0
Zm00001eb414610 Zea mays HOM05D000860 ORTHO05D006064 2.0e-06 55.1 50 52.0
Solyc10g083390.2 Solanum lycopersicum HOM05D000860 ORTHO05D005354 2.6e-06 54.7 51 52.9
CAN.G49.13 Capsicum annuum HOM05D000860 ORTHO05D005354 3.4e-06 54.3 51 49.0
Cfa009270 Carpinus fangiana HOM05D000860 ORTHO05D005354 4.4e-06 53.9 51 51.0
Haze_12304 Corylus avellana HOM05D000860 ORTHO05D005354 4.4e-06 53.9 51 51.0
Zm00001eb097260 Zea mays HOM05D000860 ORTHO05D006064 4.4e-06 53.9 50 52.0
Oeu009372.1 Olea europaea HOM05D000860 ORTHO05D005354 7.5e-06 53.1 51 47.1
Sopen05g009130 Solanum pennellii HOM05D000860 ORTHO05D005354 7.5e-06 53.1 51 51.0
Gohir.A03G131500 Gossypium hirsutum HOM05D000860 ORTHO05D005354 9.8e-06 52.8 51 47.1
Nitab4.5_0000041g0180 Nicotiana tabacum HOM05D000860 ORTHO05D005354 9.8e-06 52.8 51 49.0
Nitab4.5_0001360g0070 Nicotiana tabacum HOM05D000860 ORTHO05D005354 9.8e-06 52.8 51 47.1
Nitab4.5_0007393g0010 Nicotiana tabacum HOM05D000860 ORTHO05D005354 9.8e-06 52.8 51 49.0
Zm00001eb125040 Zea mays HOM05D000860 ORTHO05D006064 9.8e-06 52.8 55 47.3


User provided reference genes

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