Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 8.9e-273 943.0 464 100.0
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.0e-260 902.9 464 95.7
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.4e-246 855.1 461 90.7
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.5e-243 845.9 464 89.9
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 7.4e-243 843.6 461 89.6
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 1.4e-220 769.6 455 82.2
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 5.7e-219 764.2 463 82.3
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.8e-217 759.2 409 91.0
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 6.1e-213 744.2 459 78.9
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 7.9e-213 743.8 459 78.4
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 8.8e-212 740.3 459 78.2
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 2.6e-211 738.8 442 80.1
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 2.2e-210 735.7 458 77.7
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 8.2e-210 733.8 448 77.7
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.4e-209 733.0 442 79.2
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 7.7e-208 727.2 444 78.2
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 7.7e-208 727.2 458 77.5
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 1.3e-207 726.5 446 78.5
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 2.2e-207 725.7 452 76.8
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 2.2e-207 725.7 448 78.3
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.8e-207 724.9 442 78.1
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 6.5e-207 724.2 446 78.9
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.1e-206 723.4 443 77.9
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.5e-206 723.0 442 77.1
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 2.5e-206 722.2 453 76.8
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 4.2e-206 721.5 463 76.7
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 4.2e-206 721.5 456 76.8
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 9.4e-206 720.3 442 78.5
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.2e-205 719.9 468 76.1
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.6e-205 719.5 453 75.9
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.1e-205 719.2 450 77.1
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 2.1e-205 719.2 452 76.8
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 8.0e-205 717.2 440 78.2
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.0e-204 716.8 447 77.2
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 8.8e-204 713.8 443 78.1
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 8.8e-204 713.8 457 76.6
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 8.8e-204 713.8 466 75.1
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 8.8e-204 713.8 466 75.1
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.1e-203 713.4 457 76.6
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.1e-203 713.4 462 76.2
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.1e-203 713.4 462 76.2
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 1.1e-203 713.4 449 76.6
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 2.6e-203 712.2 427 79.6
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 2.6e-203 712.2 427 79.6
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 2.6e-203 712.2 461 76.8
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 4.4e-203 711.4 462 76.2
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 7.4e-203 710.7 449 75.5
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 7.4e-203 710.7 462 74.5
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.3e-202 709.9 446 77.6
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 2.8e-202 708.8 453 75.7
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 3.7e-202 708.4 442 76.0
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 3.7e-202 708.4 443 75.8
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 6.3e-202 707.6 442 76.0
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 8.2e-202 707.2 442 76.0
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 8.2e-202 707.2 462 75.5
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 8.2e-202 707.2 462 75.5
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 8.2e-202 707.2 442 75.6
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 1.4e-201 706.4 445 76.0
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 1.8e-201 706.1 459 76.0
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.6e-200 702.2 441 76.0
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 3.5e-200 701.8 441 76.2
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 4.5e-200 701.4 364 93.1
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 7.7e-200 700.7 466 74.5
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.0e-199 700.3 462 75.3
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.0e-199 700.3 436 76.6
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 5.0e-199 698.0 435 76.3
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 6.5e-199 697.6 473 72.7
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.1e-198 696.8 453 74.2
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 1.9e-198 696.0 444 75.5
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 3.2e-198 695.3 442 75.6
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 5.5e-198 694.5 446 75.1
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 1.2e-197 693.3 426 77.0
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 1.6e-197 693.0 458 74.0
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 3.6e-197 691.8 453 74.0
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 8.0e-197 690.6 462 73.8
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 1.0e-196 690.3 426 75.6
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.4e-196 689.9 457 71.3
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 2.3e-196 689.1 428 75.9
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 6.8e-196 687.6 453 74.0
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 6.8e-196 687.6 442 74.7
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 8.8e-196 687.2 466 72.3
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 2.0e-195 686.0 445 75.1
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 3.4e-195 685.3 471 72.2
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 4.4e-195 684.9 447 73.8
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 5.7e-195 684.5 433 75.8
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 7.5e-195 684.1 459 73.0
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 9.8e-195 683.7 442 75.1
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 3.7e-194 681.8 471 72.2
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 4.8e-194 681.4 462 71.6
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 8.3e-194 680.6 464 71.6
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 1.4e-193 679.9 458 72.5
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 1.4e-193 679.9 467 70.9
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.8e-193 679.5 457 72.6
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 1.8e-193 679.5 427 76.1
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 2.4e-193 679.1 446 73.8
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 7.0e-193 677.6 456 72.4
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 1.6e-192 676.4 446 73.1
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 2.7e-192 675.6 457 72.2
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 3.5e-192 675.2 455 72.1
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 3.5e-192 675.2 463 71.5
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 5.9e-192 674.5 462 71.4
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.3e-191 673.3 460 71.5
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 2.9e-191 672.2 464 70.7
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 5.0e-191 671.4 448 72.1
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 6.5e-191 671.0 460 71.7
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 7.2e-190 667.5 454 72.7
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 9.4e-190 667.2 406 77.8
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 4.7e-189 664.8 439 72.4
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 3.0e-188 662.1 443 71.6
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 3.0e-188 662.1 445 72.8
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 4.0e-188 661.8 442 72.6
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 5.2e-188 661.4 448 72.1
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 6.8e-188 661.0 465 69.7
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 5.7e-187 657.9 445 70.8
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.3e-186 656.8 415 76.1
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.2e-186 656.0 443 71.1
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.2e-186 656.0 443 71.1
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 2.8e-186 655.6 418 74.9
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 8.3e-186 654.1 423 73.3
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 1.4e-185 653.3 428 72.7
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 1.4e-185 653.3 443 70.4
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 1.8e-185 652.9 445 70.6
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 7.0e-185 651.0 445 71.7
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 2.0e-184 649.4 424 73.1
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 2.0e-184 649.4 424 72.4
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 3.5e-184 648.7 445 71.5
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 5.9e-184 647.9 425 72.9
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 7.7e-184 647.5 424 72.9
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 1.3e-183 646.7 424 72.9
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.3e-183 646.7 439 69.2
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 2.3e-183 646.0 436 72.2
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.5e-182 643.3 462 68.6
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 1.2e-181 640.2 467 67.5
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 6.8e-180 634.4 450 69.3
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 9.8e-179 630.6 389 77.1
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 1.8e-177 626.3 383 77.8
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 5.9e-176 621.3 454 68.5
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 7.8e-176 620.9 388 76.5
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 3.3e-174 615.5 398 73.9
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.2e-173 613.6 423 70.2
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 3.1e-172 609.0 466 63.3
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 3.3e-166 589.0 380 75.3
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 6.8e-156 554.7 383 70.8
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.2e-155 553.9 459 62.7
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.0e-151 539.3 423 62.6
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.2e-147 527.3 442 62.2
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.6e-144 516.9 442 58.6
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 6.6e-143 511.5 418 60.0
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.9e-138 496.1 442 58.8
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 3.3e-134 482.6 432 55.8
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 2.9e-122 443.0 283 76.3
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 3.2e-121 439.5 320 67.2
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.0e-114 417.9 436 50.5
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 1.4e-108 397.5 239 79.1
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 7.7e-107 391.7 270 69.3
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 2.8e-101 373.2 412 47.3
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 9.1e-100 368.2 231 75.3
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 1.2e-96 357.8 422 46.9
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 4.1e-92 342.8 402 45.5
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 6.5e-74 282.3 280 56.4
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 2.0e-70 270.8 162 79.0
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 8.3e-53 212.2 148 70.9
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.4e-44 184.1 113 73.5
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 9.2e-44 182.2 124 69.4
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 1.6e-40 171.4 463 30.5
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.4e-38 163.3 95 78.9
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 4.7e-32 143.3 453 28.5
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 5.1e-26 123.2 95 62.1
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.8e-23 114.8 73 76.7
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 4.8e-16 90.1 61 68.9
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 8.4e-13 79.3 79 54.4
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 8.2e-08 62.8 218 27.5
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 3.1e-07 60.8 43 65.1
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 4.0e-07 60.5 149 24.2
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 6.9e-07 59.7 43 62.8
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 4.5e-06 57.0 353 23.2
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.0e-05 55.8 399 23.3


User provided reference genes

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