Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 1.3e-224 782.7 392 100.0
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 6.1e-206 720.7 382 95.5
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 2.9e-176 622.1 386 81.6
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 2.4e-138 496.1 391 65.0
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 2.5e-135 486.1 391 63.7
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 7.3e-135 484.6 390 62.6
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 2.4e-125 453.0 397 59.4
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 1.5e-124 450.3 372 62.6
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 3.4e-124 449.1 393 60.3
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 1.7e-123 446.8 391 62.4
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 1.7e-123 446.8 390 60.3
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 1.4e-122 443.7 395 58.5
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 4.2e-122 442.2 396 60.1
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 4.2e-122 442.2 393 59.3
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 3.5e-121 439.1 400 58.2
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 4.6e-121 438.7 391 58.8
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 4.6e-121 438.7 398 57.8
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 7.9e-121 438.0 397 58.7
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 1.3e-120 437.2 381 58.5
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.3e-120 437.2 398 57.5
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 2.3e-120 436.4 398 57.5
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 2.3e-120 436.4 401 58.9
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 3.7e-118 429.1 386 57.0
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 6.2e-118 428.3 399 58.6
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.1e-117 427.6 386 57.3
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.4e-117 427.2 271 83.0
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 3.1e-117 426.0 395 55.2
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 3.1e-117 426.0 396 57.6
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 4.0e-117 425.6 386 58.3
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 5.3e-117 425.2 367 60.8
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 6.9e-117 424.9 386 57.0
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 6.9e-117 424.9 391 59.1
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 9.0e-117 424.5 385 56.9
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 1.0e-115 421.0 384 57.8
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 1.0e-115 421.0 365 59.7
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 1.3e-115 420.6 386 56.5
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.3e-115 420.6 386 56.7
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 1.3e-115 420.6 371 60.4
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.1e-114 417.5 386 56.2
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 1.1e-114 417.5 389 58.1
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 1.2e-113 414.1 391 56.5
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 2.7e-113 412.9 391 55.0
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 6.0e-113 411.8 394 57.6
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 5.1e-112 408.7 397 55.7
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 1.5e-111 407.1 404 54.2
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 3.3e-111 406.0 385 55.8
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 8.2e-110 401.4 385 56.1
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 5.9e-108 395.2 392 53.8
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 1.7e-107 393.7 384 53.9
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 2.2e-107 393.3 392 53.6
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 2.9e-107 392.9 383 55.4
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 3.8e-107 392.5 405 52.8
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 1.2e-105 387.5 385 55.1
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 6.1e-105 385.2 398 55.0
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 2.3e-104 383.3 402 53.0
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 5.1e-104 382.1 389 54.2
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 1.1e-103 380.9 392 53.6
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 1.1e-103 380.9 361 56.2
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 5.7e-103 378.6 398 54.5
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 1.3e-102 377.5 360 54.7
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 2.2e-102 376.7 381 53.3
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 6.3e-102 375.2 395 51.9
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 9.1e-101 371.3 397 51.6
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 1.5e-100 370.5 383 52.7
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.5e-100 370.5 397 51.6
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 5.9e-100 368.6 403 49.6
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 1.3e-99 367.5 360 53.3
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 5.0e-99 365.5 399 51.4
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 6.5e-99 365.2 407 50.9
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 8.5e-99 364.8 385 51.9
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 1.9e-98 363.6 400 52.8
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 5.5e-98 362.1 398 48.7
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 5.5e-98 362.1 396 50.5
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 4.6e-97 359.0 396 50.0
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.4e-96 357.5 398 48.5
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 3.9e-96 355.9 398 52.0
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 2.6e-95 353.2 423 49.4
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 3.7e-94 349.4 397 50.1
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 4.8e-94 349.0 385 49.9
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 6.3e-94 348.6 384 51.3
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 5.3e-93 345.5 395 49.9
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 9.1e-93 344.7 396 49.2
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 3.4e-92 342.8 392 52.8
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 4.5e-92 342.4 397 48.9
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 7.7e-92 341.7 396 48.7
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 1.3e-91 340.9 393 48.3
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 2.9e-91 339.7 361 50.1
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 3.8e-91 339.3 424 44.8
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 5.0e-91 339.0 518 41.9
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 4.2e-90 335.9 396 48.2
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 7.9e-89 331.6 381 48.6
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 5.2e-88 328.9 397 48.6
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 6.7e-88 328.6 397 48.6
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 8.8e-88 328.2 397 48.6
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 1.5e-87 327.4 397 48.1
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 3.3e-87 326.2 402 45.3
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 5.7e-87 325.5 442 44.6
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 6.3e-86 322.0 397 47.6
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 4.1e-85 319.3 394 45.4
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 3.5e-84 316.2 396 48.2
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 2.5e-82 310.1 386 45.6
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 1.6e-81 307.4 392 46.7
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 1.4e-80 304.3 388 46.6
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 1.2e-76 291.2 396 45.2
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 5.5e-74 282.3 268 56.7
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 3.0e-72 276.6 295 50.8
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 1.3e-70 271.2 384 43.5
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.5e-66 256.9 525 35.6
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 4.1e-61 239.6 183 67.2
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 2.1e-57 227.3 121 93.4
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 2.0e-52 210.7 195 53.3
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 2.3e-48 197.2 215 52.6
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 2.3e-48 197.2 171 54.4
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 8.3e-46 188.7 180 55.0
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 6.0e-44 182.6 200 49.0
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 8.1e-41 172.2 172 55.2
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 1.8e-40 171.0 408 30.1
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 1.2e-39 168.3 125 71.2
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 9.9e-39 165.2 387 31.3
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.9e-37 161.0 395 30.4
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 7.1e-37 159.1 219 44.7
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.2e-36 158.3 189 50.8
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 5.8e-31 139.4 182 48.4
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 9.9e-31 138.7 380 28.2
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 6.4e-30 136.0 408 26.0
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 5.1e-27 126.3 202 39.1
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 1.1e-24 118.6 129 45.7
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 2.6e-23 114.0 105 54.3
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.3e-19 100.9 99 50.5
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 3.9e-19 100.1 70 77.1
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.5e-18 97.4 93 51.6
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 1.1e-16 92.0 97 51.5
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.4e-16 90.9 74 56.8
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 1.5e-15 88.2 99 48.5
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 2.6e-15 87.4 187 35.3
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 1.6e-12 78.2 74 54.1
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.3e-11 75.1 104 45.2
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.3e-11 75.1 110 42.7
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 6.7e-11 72.8 158 35.4
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 1.4e-08 65.1 37 75.7
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 1.4e-08 65.1 37 75.7
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 2.4e-08 64.3 80 37.5
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 2.0e-07 61.2 133 27.8
FvH4_7g08791 Fragaria vesca HOM05D004567 ORTHO05D045614 1.3e-06 58.5 44 65.9
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 2.9e-06 57.4 83 37.3
Rhsim01G0140000 Rhododendron simsii HOM05D020172 ORTHO05D018188 8.4e-06 55.8 49 59.2


User provided reference genes

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