Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 4.0e-93 344.7 175 100.0
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 1.4e-90 336.3 175 97.1
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 1.1e-87 326.6 175 94.9
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 6.9e-77 290.8 173 84.4
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.2e-65 253.4 178 72.5
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 1.6e-65 253.1 173 76.9
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.1e-65 252.7 172 76.7
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 2.1e-65 252.7 172 76.7
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 2.7e-65 252.3 175 74.3
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 8.0e-65 250.8 172 78.5
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 3.0e-64 248.8 191 72.3
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 8.8e-64 247.3 175 74.9
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 2.0e-63 246.1 178 75.8
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.0e-63 246.1 175 73.1
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 7.4e-63 244.2 176 72.7
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 2.2e-62 242.7 179 72.6
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 8.2e-62 240.7 178 71.3
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 1.4e-61 240.0 180 70.6
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.4e-61 240.0 168 74.4
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.8e-61 239.6 176 71.6
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.1e-61 238.8 175 70.9
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 9.1e-61 237.3 176 74.4
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 3.5e-60 235.3 201 64.2
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 3.5e-60 235.3 178 69.1
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 7.7e-60 234.2 180 70.6
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 1.7e-59 233.0 174 68.4
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 2.2e-59 232.6 175 70.3
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 2.2e-59 232.6 182 70.3
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 2.2e-59 232.6 172 70.9
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 3.8e-59 231.9 185 70.3
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 5.0e-59 231.5 184 67.4
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 5.0e-59 231.5 184 67.4
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 8.5e-59 230.7 180 71.7
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 8.5e-59 230.7 175 69.7
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.5e-58 229.9 177 67.2
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.9e-58 229.6 204 60.8
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 2.5e-58 229.2 195 67.7
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 3.2e-58 228.8 173 69.9
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 4.2e-58 228.4 173 69.9
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 4.2e-58 228.4 185 66.5
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 5.5e-58 228.0 178 68.5
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 9.4e-58 227.3 173 69.9
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 9.4e-58 227.3 171 68.4
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 1.2e-57 226.9 181 71.3
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.6e-57 226.5 172 68.6
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 1.6e-57 226.5 186 65.1
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 2.1e-57 226.1 184 67.9
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 3.6e-57 225.3 189 66.7
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 4.7e-57 224.9 178 69.1
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 6.1e-57 224.6 180 67.2
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 6.1e-57 224.6 177 69.5
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.1e-57 224.6 174 69.5
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.1e-57 224.6 174 69.5
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.1e-57 224.6 174 69.5
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 8.0e-57 224.2 179 69.8
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 8.0e-57 224.2 177 69.5
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 8.0e-57 224.2 177 67.2
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 8.0e-57 224.2 172 67.4
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.3e-56 222.6 171 68.4
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 3.0e-56 222.2 181 63.0
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 4.0e-56 221.9 172 68.0
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 4.0e-56 221.9 180 67.8
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 5.2e-56 221.5 180 66.7
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 5.2e-56 221.5 173 69.4
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 6.8e-56 221.1 179 67.0
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 6.8e-56 221.1 202 64.4
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.5e-55 219.9 173 67.6
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 2.0e-55 219.5 130 83.8
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 2.0e-55 219.5 187 64.7
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 3.4e-55 218.8 188 64.9
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 9.8e-55 217.2 172 66.3
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.3e-54 216.9 174 65.5
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 3.7e-54 215.3 182 63.2
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 3.7e-54 215.3 182 63.2
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 3.7e-54 215.3 169 68.0
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.3e-54 214.5 174 64.4
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.3e-54 214.5 174 64.9
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 8.3e-54 214.2 190 60.5
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 8.3e-54 214.2 182 63.2
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.1e-53 213.8 193 61.1
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.1e-53 213.8 173 65.3
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.4e-53 213.4 184 63.6
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 2.4e-53 212.6 181 63.5
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 2.4e-53 212.6 181 63.5
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 2.4e-53 212.6 175 65.7
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.4e-53 212.6 177 63.3
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 5.4e-53 211.5 175 65.7
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 2.0e-52 209.5 203 58.6
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 3.5e-52 208.8 135 79.3
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 4.5e-52 208.4 176 65.3
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 5.9e-52 208.0 175 65.1
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 7.7e-52 207.6 173 63.6
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 1.0e-51 207.2 187 59.4
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 6.5e-51 204.5 179 62.6
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 6.5e-51 204.5 157 71.3
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 8.5e-51 204.1 178 61.8
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 1.9e-50 203.0 175 62.3
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 1.9e-50 203.0 175 62.3
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 3.2e-50 202.2 133 77.4
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 1.6e-49 199.9 180 60.6
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 2.1e-49 199.5 175 61.7
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 3.6e-49 198.7 175 58.3
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 6.1e-49 198.0 184 60.9
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.0e-48 197.2 178 59.6
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 1.2e-47 193.7 171 57.9
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 2.6e-47 192.6 181 59.7
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.7e-47 191.4 177 61.6
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 7.5e-47 191.0 186 58.1
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 2.2e-46 189.5 190 59.5
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.1e-45 185.7 120 75.0
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 5.4e-45 184.9 177 58.8
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.6e-44 183.3 174 62.1
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 3.8e-43 178.7 108 85.2
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 6.6e-43 177.9 152 63.8
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.2e-40 168.3 176 55.7
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 4.4e-39 165.2 138 67.4
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 4.9e-38 161.8 145 64.1
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 6.4e-38 161.4 188 47.9
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.4e-37 160.2 132 59.8
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 3.2e-37 159.1 189 49.2
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 4.1e-37 158.7 91 85.7
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 2.7e-36 156.0 132 62.1
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 4.0e-32 142.1 102 66.7
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 2.9e-30 136.0 93 76.3
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.1e-29 134.0 108 62.0
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 1.9e-29 133.3 101 66.3
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 4.1e-29 132.1 112 57.1
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 4.1e-29 132.1 101 65.3
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 2.7e-28 129.4 98 70.4
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 3.5e-28 129.0 106 63.2
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 1.0e-27 127.5 102 64.7
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 1.0e-27 127.5 107 57.9
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.3e-27 127.1 107 56.1
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 3.6e-25 119.0 115 58.3
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.1e-24 117.5 172 43.0
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 2.3e-24 116.3 94 58.5
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 4.0e-24 115.5 103 57.3
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 2.6e-23 112.8 103 57.3
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 9.8e-23 110.9 126 52.4
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 1.3e-22 110.5 106 54.7
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.4e-21 106.3 98 53.1
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.6e-20 103.6 88 65.9
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 6.0e-20 101.7 80 61.2
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 6.6e-19 98.2 71 64.8
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 4.3e-18 95.5 102 46.1
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 1.2e-17 94.0 136 48.5
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.1e-17 93.2 64 76.6
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 3.6e-17 92.4 101 50.5
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 8.1e-17 91.3 67 71.6
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 6.8e-16 88.2 98 41.8
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 8.9e-16 87.8 94 50.0
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 1.2e-12 77.4 129 35.7


User provided reference genes

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