Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 1.6e-51 205.7 94 100.0
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 7.6e-46 186.8 85 97.6
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 1.2e-43 179.5 85 94.1
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 2.7e-43 178.3 85 94.1
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 5.1e-42 174.1 85 90.6
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 8.7e-42 173.3 85 90.6
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 1.9e-41 172.2 85 91.8
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 1.9e-41 172.2 85 90.6
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 1.9e-41 172.2 85 90.6
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 1.9e-41 172.2 85 90.6
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 2.5e-41 171.8 85 90.6
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 3.3e-41 171.4 85 89.4
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 7.3e-41 170.2 85 88.2
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 1.3e-40 169.5 85 88.2
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 1.3e-40 169.5 85 89.4
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 1.3e-40 169.5 85 89.4
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 2.1e-40 168.7 82 91.5
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 2.8e-40 168.3 85 88.2
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 3.6e-40 167.9 81 92.6
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 4.8e-40 167.5 85 89.4
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 8.1e-40 166.8 85 89.4
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 1.1e-39 166.4 85 89.4
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 1.4e-39 166.0 85 87.1
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 1.4e-39 166.0 85 88.2
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 1.4e-39 166.0 94 80.9
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 1.4e-39 166.0 82 87.8
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 1.8e-39 165.6 85 88.2
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 3.1e-39 164.9 85 87.1
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 3.1e-39 164.9 85 87.1
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 3.1e-39 164.9 85 87.1
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 5.3e-39 164.1 81 90.1
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 1.5e-38 162.5 86 83.7
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 1.5e-38 162.5 86 83.7
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 1.5e-38 162.5 86 83.7
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 1.5e-38 162.5 86 83.7
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 1.5e-38 162.5 81 90.1
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 1.5e-38 162.5 79 88.6
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 2.0e-38 162.2 84 86.9
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 2.0e-38 162.2 78 89.7
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 3.4e-38 161.4 84 85.7
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 3.4e-38 161.4 80 90.0
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 4.5e-38 161.0 85 85.9
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 4.5e-38 161.0 79 87.3
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 9.9e-38 159.8 85 84.7
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 9.9e-38 159.8 80 87.5
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.7e-37 159.1 86 83.7
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 1.7e-37 159.1 85 84.7
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 1.7e-37 159.1 85 84.7
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 1.7e-37 159.1 85 85.9
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 1.7e-37 159.1 79 86.1
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 2.2e-37 158.7 79 87.3
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 2.2e-37 158.7 79 87.3
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 2.2e-37 158.7 79 84.8
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 2.9e-37 158.3 80 85.0
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 2.9e-37 158.3 86 82.6
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 3.8e-37 157.9 85 84.7
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 4.9e-37 157.5 85 84.7
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 4.9e-37 157.5 85 84.7
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 4.9e-37 157.5 85 83.5
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 4.9e-37 157.5 84 83.3
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 4.9e-37 157.5 85 84.7
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 4.9e-37 157.5 85 84.7
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 4.9e-37 157.5 79 83.5
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 8.4e-37 156.8 85 85.9
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 1.1e-36 156.4 85 83.5
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 1.1e-36 156.4 85 83.5
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 1.1e-36 156.4 85 83.5
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 1.1e-36 156.4 85 82.4
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 1.4e-36 156.0 90 81.1
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 1.4e-36 156.0 85 83.5
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 1.4e-36 156.0 85 83.5
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 1.4e-36 156.0 85 83.5
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 1.4e-36 156.0 85 83.5
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 1.9e-36 155.6 82 85.4
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 2.4e-36 155.2 90 80.0
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 2.4e-36 155.2 87 80.5
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 4.2e-36 154.5 82 82.9
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 7.1e-36 153.7 80 81.2
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 9.3e-36 153.3 85 80.0
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 1.2e-35 152.9 79 86.1
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 1.2e-35 152.9 85 82.4
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 1.6e-35 152.5 83 84.3
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 1.6e-35 152.5 78 83.3
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 2.1e-35 152.1 84 83.3
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 2.7e-35 151.8 81 81.5
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 7.9e-35 150.2 82 82.9
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 1.3e-34 149.4 85 81.2
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 1.8e-34 149.1 86 79.1
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 2.3e-34 148.7 85 78.8
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 8.7e-34 146.7 102 67.6
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.5e-33 146.0 84 78.6
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 4.3e-33 144.4 84 77.4
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 4.3e-33 144.4 77 81.8
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 2.8e-32 141.7 85 77.6
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 5.3e-31 137.5 84 75.0
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 9.0e-31 136.7 87 74.7
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 1.3e-29 132.9 87 70.1
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.4e-29 130.2 68 83.8
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 1.9e-28 129.0 62 88.7
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 4.2e-28 127.9 65 90.8
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 1.2e-27 126.3 61 90.2
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 8.7e-26 120.2 61 80.3
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 2.5e-25 118.6 64 82.8
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 2.2e-21 105.5 49 89.8
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 1.9e-20 102.4 47 91.5
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 6.0e-19 97.4 64 65.6
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 2.2e-13 79.0 58 60.3
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 2.2e-13 79.0 56 58.9
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 2.7e-11 72.0 38 86.8
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.0e-10 70.1 40 80.0
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 2.5e-09 65.5 40 72.5
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 3.3e-09 65.1 42 73.8
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 1.8e-07 59.3 41 68.3


User provided reference genes

Program Settings