Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018787.2 Cucumis melo HOM05D003773 ORTHO05D004377 3.1e-116 421.8 207 100.0
vmacro03401 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 8.0e-40 167.9 156 54.5
vmacro23351 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 1.4e-39 167.2 156 54.5
Nitab4.5_0007004g0040 Nicotiana tabacum HOM05D003773 ORTHO05D004377 1.2e-35 154.1 151 56.3
Haze_12989 Corylus avellana HOM05D003773 ORTHO05D004377 1.5e-33 147.1 151 52.3
FAN09G4222 Fragaria x ananassa HOM05D003773 ORTHO05D004377 4.3e-33 145.6 176 46.6
ClCG09G002660 Citrullus lanatus HOM05D003773 ORTHO05D004377 1.6e-32 143.7 218 43.1
Lj3C848T13 Lonicera japonica HOM05D003773 ORTHO05D004377 1.4e-31 140.6 151 49.7
Peaxi162Scf00314g00337 Petunia axillaris HOM05D003773 ORTHO05D004377 1.3e-29 134.0 143 51.0
SHI10290 Sapria himalayana HOM05D003773 ORTHO05D004377 4.6e-27 125.6 159 47.2
BcaB01g05423 Brassica carinata HOM05D003773 ORTHO05D004377 3.0e-26 122.9 152 44.1
A10p25590 Brassica napus HOM05D003773 ORTHO05D004377 1.1e-25 120.9 129 48.1
DCAR_023465 Daucus carota HOM05D003773 ORTHO05D004377 1.5e-25 120.6 151 47.0
BraA10t44626Z Brassica rapa HOM05D003773 ORTHO05D004377 1.9e-25 120.2 129 48.1
MBI02_g15890_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 2.3e-23 113.2 149 43.6
Hund05549 Selenicereus undatus HOM05D003773 ORTHO05D004377 1.7e-21 107.1 119 47.1
Peaxi162Scf00571g00532 Petunia axillaris HOM05D003773 ORTHO05D004377 2.9e-21 106.3 127 47.2
C03p06330 Brassica napus HOM05D003773 ORTHO05D004377 6.4e-21 105.1 154 40.3
BolC3t13141H Brassica oleracea HOM05D003773 ORTHO05D004377 6.4e-21 105.1 154 40.3
COL.COLO4_03532 Corchorus olitorius HOM05D003773 ORTHO05D004377 1.4e-20 104.0 148 40.5
CSS0029091 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 9.2e-20 101.3 123 45.5
COL.COLO4_20947 Corchorus olitorius HOM05D003773 ORTHO05D004377 9.2e-20 101.3 151 40.4
QL08p034440 Quercus lobata HOM05D003773 ORTHO05D004377 2.1e-19 100.1 131 42.7
ClCG02G001540 Citrullus lanatus HOM05D003773 ORTHO05D004377 6.0e-19 98.6 152 44.1
Ah.12g059510 Amaranthus hybridus HOM05D003773 ORTHO05D004377 3.0e-18 96.3 142 41.5
Os08g0512300 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 6.6e-18 95.1 114 44.7
AL3G23680 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 8.6e-18 94.7 103 46.6
Zm00001eb035310 Zea mays HOM05D003773 ORTHO05D004377 1.5e-17 94.0 115 43.5
Prupe.2G111600 Prunus persica HOM05D003773 ORTHO05D004377 2.5e-17 93.2 79 54.4
Hund25164 Selenicereus undatus HOM05D003773 ORTHO05D004377 4.3e-17 92.4 87 52.9
Prupe.5G225800 Prunus persica HOM05D003773 ORTHO05D004377 7.3e-17 91.7 118 40.7
Sabra13G0011200 Salix brachista HOM05D003773 ORTHO05D004377 7.3e-17 91.7 107 44.9
BcaB01g05420 Brassica carinata HOM05D003773 ORTHO05D004377 9.5e-17 91.3 147 35.4
AUR62035657 Chenopodium quinoa HOM05D003773 ORTHO05D004377 2.8e-16 89.7 87 51.7
Sed0008204 Sechium edule HOM05D003773 ORTHO05D004377 2.8e-16 89.7 81 58.0
CsaV3_7G003900 Cucumis sativus L. HOM05D000091 ORTHO05D001742 6.2e-16 88.6 48 89.6
MD06G1221400 Malus domestica HOM05D003773 ORTHO05D004377 6.2e-16 88.6 103 47.6
AUR62017150 Chenopodium quinoa HOM05D003773 ORTHO05D004377 8.1e-16 88.2 87 50.6
Haze_26189 Corylus avellana HOM05D003773 ORTHO05D004377 8.1e-16 88.2 157 31.2
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 2.4e-15 86.7 106 43.4
MD14G1230700 Malus domestica HOM05D003773 ORTHO05D004377 5.2e-15 85.5 151 37.1
CBR_g17690 Chara braunii HOM05D003773 ORTHO05D004377 6.8e-15 85.1 120 40.8
Sopen03g037520 Solanum pennellii HOM05D003773 ORTHO05D004377 8.9e-15 84.7 79 53.2
CSS0007239 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 1.5e-14 84.0 79 51.9
FAN05G4396 Fragaria x ananassa HOM05D003773 ORTHO05D004377 1.5e-14 84.0 79 51.9
Carub.0003s1141 Capsella rubella HOM05D003773 ORTHO05D004377 2.0e-14 83.6 72 58.3
AagrBONN_evm.TU.Sc2ySwM_117.1003 Anthoceros agrestis HOM05D003773 ORTHO05D004377 2.6e-14 83.2 88 46.6
FvH4_6g43850 Fragaria vesca HOM05D003773 ORTHO05D004377 2.6e-14 83.2 79 51.9
HPP92_004888 Vanilla planifolia HOM05D003773 ORTHO05D004377 4.4e-14 82.4 91 44.0
CSS0038312 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 5.8e-14 82.0 78 51.3
Solyc03g118570.4 Solanum lycopersicum HOM05D003773 ORTHO05D004377 5.8e-14 82.0 78 52.6
SGA_v2.0_scaffold220G42596 Striga asiatica HOM05D003773 ORTHO05D004377 5.8e-14 82.0 79 51.9
MELO3C023397.2 Cucumis melo HOM05D003773 ORTHO05D004377 2.2e-13 80.1 76 55.3
Eucgr.G01411 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.2e-13 80.1 140 35.0
FAN14G4120 Fragaria x ananassa HOM05D003773 ORTHO05D004377 2.9e-13 79.7 79 50.6
Nitab4.5_0002046g0050 Nicotiana tabacum HOM05D003773 ORTHO05D004377 2.9e-13 79.7 77 51.9
CAN.G843.44 Capsicum annuum HOM05D003773 ORTHO05D004377 3.8e-13 79.3 77 51.9
Lsat_1_v5_gn_6_29461 Lactuca sativa HOM05D003773 ORTHO05D004377 3.8e-13 79.3 90 40.0
CsaV3_7G032670 Cucumis sativus L. HOM05D003773 ORTHO05D004377 6.4e-13 78.6 75 54.7
Dinv09299 Davidia involucrata HOM05D003773 ORTHO05D004377 6.4e-13 78.6 75 53.3
Os11g0523500 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 6.4e-13 78.6 90 43.3
Ciclev10015999m.g Citrus clementina HOM05D003773 ORTHO05D004377 8.4e-13 78.2 77 51.9
TAR626G0538 Trochodendron aralioides HOM05D003773 ORTHO05D004377 1.1e-12 77.8 75 52.0
MSTRG.22069 Avicennia marina HOM05D003773 ORTHO05D004377 1.9e-12 77.0 76 52.6
ECA233G0965 Erigeron canadensis HOM05D003773 ORTHO05D004377 1.9e-12 77.0 80 45.0
Nn7g36520 Nelumbo nucifera HOM05D003773 ORTHO05D004377 1.9e-12 77.0 75 52.0
Oeu015711.3 Olea europaea HOM05D003773 ORTHO05D004377 1.9e-12 77.0 46 78.3
Pp3c14_22730 Physcomitrium patens HOM05D003773 ORTHO05D004377 1.9e-12 77.0 77 51.9
RcHm_v2.0_Chr2g0160601 Rosa chinensis HOM05D003773 ORTHO05D004377 1.9e-12 77.0 77 49.4
SMO340G0057 Selaginella moellendorffii HOM05D003773 ORTHO05D004377 1.9e-12 77.0 84 45.2
SGA_v2.0_scaffold227G43195 Striga asiatica HOM05D003773 ORTHO05D004377 1.9e-12 77.0 76 51.3
ATR0723G050 Amborella trichopoda HOM05D003773 ORTHO05D004377 2.4e-12 76.6 78 48.7
Potri.013G012500 Populus trichocarpa HOM05D003773 ORTHO05D004377 2.4e-12 76.6 76 53.9
Solyc12g040810.2 Solanum lycopersicum HOM05D003773 ORTHO05D004377 2.4e-12 76.6 77 50.6
Sopen12g020600 Solanum pennellii HOM05D003773 ORTHO05D004377 2.4e-12 76.6 77 50.6
CDE05G0639 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 3.2e-12 76.3 76 51.3
Migut.A01113 Erythranthe guttata HOM05D003773 ORTHO05D004377 3.2e-12 76.3 76 51.3
Lj4g0017678 Lotus japonicus HOM05D003773 ORTHO05D004377 3.2e-12 76.3 75 50.7
Nitab4.5_0001264g0100 Nicotiana tabacum HOM05D003773 ORTHO05D004377 3.2e-12 76.3 77 50.6
TPR.G11959 Trifolium pratense HOM05D003773 ORTHO05D004377 3.2e-12 76.3 76 52.6
arahy.Tifrunner.gnm1.ann1.E2NQKT Arachis hypogaea HOM05D003773 ORTHO05D004377 4.2e-12 75.9 75 52.0
CiPaw.02G104400 Carya illinoinensis HOM05D003773 ORTHO05D004377 4.2e-12 75.9 76 52.6
FvH4_7g02690 Fragaria vesca HOM05D003773 ORTHO05D004377 4.2e-12 75.9 77 49.4
FAN03G1906 Fragaria x ananassa HOM05D003773 ORTHO05D004377 4.2e-12 75.9 77 48.1
FAN06G3388 Fragaria x ananassa HOM05D003773 ORTHO05D004377 4.2e-12 75.9 77 49.4
RcHm_v2.0_Chr7g0226631 Rosa chinensis HOM05D003773 ORTHO05D004377 4.2e-12 75.9 77 48.1
Prupe.3G223100 Prunus persica HOM05D003773 ORTHO05D004377 5.4e-12 75.5 76 48.7
Aqoxy5G00933 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 7.1e-12 75.1 76 50.0
Glyma.08G111200 Glycine max HOM05D003773 ORTHO05D004377 7.1e-12 75.1 75 50.7
Lj4g0004931 Lotus japonicus HOM05D003773 ORTHO05D004377 7.1e-12 75.1 75 50.7
PGR142G1397 Punica granatum HOM05D003773 ORTHO05D004377 7.1e-12 75.1 75 52.0
RhsimUnG0179500 Rhododendron simsii HOM05D003773 ORTHO05D004377 9.2e-12 74.7 75 48.0
RhsimUnG0179700 Rhododendron simsii HOM05D003773 ORTHO05D004377 9.2e-12 74.7 75 48.0
RhsimUnG0210700 Rhododendron simsii HOM05D003773 ORTHO05D004377 9.2e-12 74.7 75 48.0
Sc07g0000800 Simmondsia chinensis HOM05D003773 ORTHO05D004377 9.2e-12 74.7 76 48.7
Thhalv10021168m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 1.2e-11 74.3 76 48.7
Sp3g10300 Schrenkiella parvula HOM05D003773 ORTHO05D004377 1.2e-11 74.3 75 48.0
SEGI_14663 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 1.2e-11 74.3 97 43.3
TAR624G0440 Trochodendron aralioides HOM05D003773 ORTHO05D004377 1.2e-11 74.3 75 49.3
CDE02G2566 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 1.6e-11 73.9 76 48.7
TWI39G0383 Tripterygium wilfordii HOM05D003773 ORTHO05D004377 1.6e-11 73.9 75 53.3
GSVIVG01019372001 Vitis vinifera HOM05D003773 ORTHO05D004377 1.6e-11 73.9 75 50.7
Duzib052G0913 Durio zibethinus HOM05D003773 ORTHO05D004377 2.1e-11 73.6 75 52.0
Eucgr.G02268 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.1e-11 73.6 76 50.0
MBI02_g12519_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 2.1e-11 73.6 75 45.3
EL10Ac9g21128 Beta vulgaris HOM05D003773 ORTHO05D004377 2.7e-11 73.2 75 49.3
Cfa004598 Carpinus fangiana HOM05D003773 ORTHO05D004377 2.7e-11 73.2 76 50.0
THA.LOC104799137 Tarenaya hassleriana HOM05D003773 ORTHO05D004377 2.7e-11 73.2 75 48.0
AT5G12210 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 3.5e-11 72.8 75 48.0
BolC9t59300H Brassica oleracea HOM05D003773 ORTHO05D004377 3.5e-11 72.8 76 46.1
FAN10G4129 Fragaria x ananassa HOM05D003773 ORTHO05D004377 3.5e-11 72.8 77 46.8
Mapoly0074s0013 Marchantia polymorpha HOM05D003773 ORTHO05D004377 3.5e-11 72.8 78 46.2
Aa31LG3G15020 Aethionema arabicum HOM05D003773 ORTHO05D004377 4.6e-11 72.4 75 46.7
BcaNung06880 Brassica carinata HOM05D003773 ORTHO05D004377 4.6e-11 72.4 75 45.3
C09p64680 Brassica napus HOM05D003773 ORTHO05D004377 4.6e-11 72.4 75 45.3
Thhalv10014116m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 4.6e-11 72.4 75 46.7
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 4.6e-11 72.4 46 73.9
Thecc.10G119200 Theobroma cacao HOM05D003773 ORTHO05D004377 4.6e-11 72.4 75 50.7
Eucgr.G01406 Eucalyptus grandis HOM05D003773 ORTHO05D004377 6.0e-11 72.0 75 49.3
Lalb_Chr07g0186751 Lupinus albus HOM05D003773 ORTHO05D004377 6.0e-11 72.0 73 49.3
Sp6g31430 Schrenkiella parvula HOM05D003773 ORTHO05D004377 6.0e-11 72.0 74 44.6
VMungo0251G2733 Vigna mungo HOM05D003773 ORTHO05D004377 6.0e-11 72.0 75 49.3
AL6G23000 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 7.8e-11 71.6 75 46.7
Pp3c1_39910 Physcomitrium patens HOM05D003773 ORTHO05D004377 7.8e-11 71.6 80 43.8
QL05p004180 Quercus lobata HOM05D003773 ORTHO05D004377 7.8e-11 71.6 75 50.7
MSTRG.21385 Avicennia marina HOM05D003773 ORTHO05D004377 1.0e-10 71.2 81 43.2
Eucgr.K00882 Eucalyptus grandis HOM05D003773 ORTHO05D004377 1.0e-10 71.2 75 49.3
AT3G12070 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 1.3e-10 70.9 73 43.8
Cfa027002 Carpinus fangiana HOM05D003773 ORTHO05D123979 1.3e-10 70.9 156 30.8
Hma1.2p1_1650F.1_g295665 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 1.3e-10 70.9 75 49.3
PGSC0003DMG400005677 Solanum tuberosum HOM05D003773 ORTHO05D004377 1.3e-10 70.9 46 69.6
BcaB01g05426 Brassica carinata HOM05D003773 ORTHO05D004377 1.7e-10 70.5 73 43.8
Ca_17973_v3 Cicer arietinum L. HOM05D003773 ORTHO05D004377 1.7e-10 70.5 74 50.0
Eucgr.G02437 Eucalyptus grandis HOM05D003773 ORTHO05D004377 1.7e-10 70.5 73 49.3
Gohir.A03G162800 Gossypium hirsutum HOM05D003773 ORTHO05D004377 1.7e-10 70.5 74 48.6
Manes.04G060700 Manihot esculenta HOM05D003773 ORTHO05D004377 1.7e-10 70.5 82 45.1
Psat7g074520 Pisum sativum HOM05D003773 ORTHO05D004377 1.7e-10 70.5 75 49.3
GSVIVG01000415001 Vitis vinifera HOM05D003773 ORTHO05D004377 1.7e-10 70.5 75 48.0
Carub.0006s1071 Capsella rubella HOM05D003773 ORTHO05D004377 2.3e-10 70.1 75 45.3
Glyma.05G153500 Glycine max HOM05D003773 ORTHO05D004377 2.3e-10 70.1 74 48.6
Aqoxy7G03759 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 3.0e-10 69.7 75 48.0
HanXRQChr02g0056321 Helianthus annuus HOM05D003773 ORTHO05D004377 3.0e-10 69.7 76 43.4
Hma1.2p1_1872F.1_g306150 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 3.0e-10 69.7 75 48.0
Actinidia31174 Actinidia chinensis HOM05D003773 ORTHO05D004377 3.9e-10 69.3 71 47.9
Cpa.g.sc50.7 Carica papaya HOM05D003773 ORTHO05D004377 3.9e-10 69.3 73 47.9
Gohir.D02G186100 Gossypium hirsutum HOM05D003773 ORTHO05D004377 3.9e-10 69.3 73 47.9
Gorai.005G208400 Gossypium raimondii HOM05D003773 ORTHO05D004377 3.9e-10 69.3 73 47.9
Medtr1g111160 Medicago truncatula HOM05D003773 ORTHO05D004377 3.9e-10 69.3 73 49.3
Phvul.002G235200 Phaseolus vulgaris HOM05D003773 ORTHO05D004377 5.1e-10 68.9 73 46.6
MD09G1102700 Malus domestica HOM05D003773 ORTHO05D004377 6.6e-10 68.6 79 44.3
CARHR200910 Cardamine hirsuta HOM05D003773 ORTHO05D004377 8.7e-10 68.2 73 43.8
Nn7g37010 Nelumbo nucifera HOM05D003773 ORTHO05D004377 8.7e-10 68.2 41 78.0
Cc04_g06080 Coffea canephora HOM05D003773 ORTHO05D004377 1.1e-09 67.8 73 45.2
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 1.9e-09 67.0 37 75.7
PSO017G1854 Papaver somniferum HOM05D003773 ORTHO05D004377 2.5e-09 66.6 74 44.6
PSO339G0310 Papaver somniferum HOM05D003773 ORTHO05D004377 2.5e-09 66.6 74 44.6
Atru.chr7.1713 Acer truncatum HOM05D003773 ORTHO05D004377 9.6e-09 64.7 75 46.7
Pp3c2_3550 Physcomitrium patens HOM05D003773 ORTHO05D004377 9.6e-09 64.7 66 50.0
CANSAT11G0557 Cannabis sativa HOM05D003773 ORTHO05D004377 1.2e-08 64.3 73 42.5
RcHm_v2.0_Chr5g0048191 Rosa chinensis HOM05D003773 ORTHO05D004377 1.6e-08 63.9 66 50.0
unitig_8.g4953 Utricularia gibba HOM05D003773 ORTHO05D004377 2.8e-08 63.2 46 60.9
HanXRQChr02g0051831 Helianthus annuus HOM05D003773 ORTHO05D004377 3.6e-08 62.8 67 46.3
DCAR_026891 Daucus carota HOM05D003773 ORTHO05D004377 4.7e-08 62.4 40 65.0
Cfa014475 Carpinus fangiana HOM05D003773 ORTHO05D004377 1.8e-07 60.5 66 47.0
MCO02G125 Micromonas commoda HOM05D003773 ORTHO05D004377 2.6e-06 56.6 81 35.8


User provided reference genes

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