Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 2.2e-163 578.9 299 100.0
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 5.7e-156 554.3 299 95.0
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 5.7e-156 554.3 299 95.0
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 9.8e-156 553.5 297 96.3
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 2.1e-142 509.2 299 88.3
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 6.6e-128 461.1 292 79.1
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 1.6e-126 456.4 295 77.6
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 6.9e-125 451.1 293 79.2
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 6.9e-125 451.1 293 79.2
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 9.0e-125 450.7 292 79.5
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.2e-124 450.3 291 81.4
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 1.5e-124 449.9 292 78.8
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 1.5e-124 449.9 294 78.9
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 3.4e-124 448.7 292 80.1
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 4.4e-124 448.4 293 78.5
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 1.3e-123 446.8 293 78.2
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 1.7e-123 446.4 293 78.2
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 3.8e-123 445.3 291 78.0
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 4.9e-123 444.9 292 76.0
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 6.4e-123 444.5 293 78.5
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 1.1e-122 443.7 294 77.2
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 1.4e-122 443.4 298 78.2
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 1.4e-122 443.4 292 79.8
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 1.9e-122 443.0 292 77.7
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.6e-121 439.9 291 75.9
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 4.6e-121 438.3 287 77.7
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 7.8e-121 437.6 291 75.6
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.0e-120 437.2 292 76.0
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.0e-120 437.2 292 76.0
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.7e-120 436.4 292 75.7
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.7e-120 436.4 292 76.7
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 5.1e-120 434.9 292 77.1
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 2.5e-119 432.6 292 76.7
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 4.3e-119 431.8 291 76.6
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 7.3e-119 431.0 295 76.9
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 7.3e-119 431.0 292 76.0
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 9.6e-119 430.6 293 75.1
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 2.1e-118 429.5 292 75.0
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 2.1e-118 429.5 293 76.5
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.6e-118 428.7 292 75.3
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 6.2e-118 427.9 291 77.3
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 8.1e-118 427.6 293 75.1
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 1.1e-117 427.2 295 75.9
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 3.1e-117 425.6 293 76.1
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 5.3e-117 424.9 288 77.4
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 6.9e-117 424.5 295 75.6
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 6.9e-117 424.5 357 65.8
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.5e-116 423.3 293 76.1
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.0e-116 422.9 292 75.3
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 7.6e-116 421.0 294 75.2
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 2.2e-115 419.5 292 74.0
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 3.8e-115 418.7 292 74.3
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 3.8e-115 418.7 302 71.9
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 8.4e-115 417.5 294 74.1
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 1.9e-114 416.4 288 75.3
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 3.2e-114 415.6 294 75.2
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 4.2e-114 415.2 292 74.7
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 5.4e-114 414.8 292 74.3
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 9.3e-114 414.1 293 74.4
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 1.2e-113 413.7 291 77.0
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 1.2e-113 413.7 294 73.8
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 2.1e-113 412.9 293 73.4
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 3.5e-113 412.1 292 72.9
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 3.5e-113 412.1 289 73.4
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 3.5e-113 412.1 293 73.7
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 4.6e-113 411.8 292 73.6
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 4.6e-113 411.8 285 73.3
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 6.0e-113 411.4 291 74.9
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 6.0e-113 411.4 291 74.9
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 7.9e-113 411.0 291 72.2
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.0e-112 410.6 292 73.3
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 1.3e-112 410.2 289 75.1
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 5.1e-112 408.3 295 73.2
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 5.1e-112 408.3 295 73.2
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 5.1e-112 408.3 288 74.3
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.1e-111 407.1 291 73.9
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 1.9e-111 406.4 295 72.9
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.9e-111 406.4 291 72.9
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 1.9e-111 406.4 288 75.0
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 3.3e-111 405.6 298 73.8
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 5.6e-111 404.8 296 72.6
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 7.4e-111 404.4 293 73.4
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 7.4e-111 404.4 277 75.8
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 7.4e-111 404.4 277 75.8
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 9.6e-111 404.1 291 74.2
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 9.6e-111 404.1 289 74.7
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 1.3e-110 403.7 293 70.6
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 2.1e-110 402.9 295 70.5
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 3.7e-110 402.1 295 72.5
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 4.8e-110 401.7 284 74.6
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 1.8e-109 399.8 236 85.2
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 3.1e-109 399.1 290 74.1
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 3.1e-109 399.1 266 76.3
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 4.0e-109 398.7 289 73.7
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 4.0e-109 398.7 329 66.6
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 5.3e-109 398.3 310 68.4
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 6.9e-109 397.9 341 64.8
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 6.9e-109 397.9 286 74.1
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 9.0e-109 397.5 341 64.8
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 9.0e-109 397.5 293 69.6
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 2.0e-108 396.4 292 72.9
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 2.0e-108 396.4 293 68.9
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 2.6e-108 396.0 268 76.1
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 3.4e-108 395.6 292 73.3
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 7.6e-108 394.4 293 68.9
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 1.7e-107 393.3 286 71.3
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 3.8e-107 392.1 318 67.6
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 4.9e-107 391.7 299 69.6
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 6.4e-107 391.3 291 71.5
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 1.9e-106 389.8 289 71.3
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 6.0e-105 384.8 291 67.4
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 6.7e-104 381.3 270 74.4
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 9.6e-103 377.5 300 65.3
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 3.7e-102 375.6 293 67.2
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 8.2e-102 374.4 292 68.8
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 3.1e-101 372.5 351 60.4
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 5.3e-101 371.7 227 82.4
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 3.4e-100 369.0 300 66.7
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 6.5e-99 364.8 288 67.7
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 1.4e-98 363.6 266 71.1
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 1.6e-97 360.1 229 78.6
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 1.6e-97 360.1 288 66.3
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 1.3e-96 357.1 294 66.3
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 7.4e-95 351.3 327 60.2
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.1e-93 347.4 292 64.4
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.2e-92 344.0 292 63.7
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 2.6e-92 342.8 222 76.1
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 1.0e-88 330.9 197 83.8
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 1.1e-87 327.4 227 76.2
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 3.7e-86 322.4 231 73.6
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 7.7e-84 314.7 217 73.7
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 2.2e-83 313.2 228 67.1
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.5e-82 309.7 229 71.2
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 1.0e-80 304.3 219 68.9
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 6.7e-80 301.6 222 67.6
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 5.7e-79 298.5 308 56.2
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 1.7e-78 297.0 201 72.6
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 3.7e-78 295.8 265 63.0
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 6.3e-78 295.0 193 76.7
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.1e-77 294.3 264 63.6
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 8.8e-72 274.6 186 76.3
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 1.2e-68 264.2 197 69.0
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 9.4e-58 228.0 206 54.9
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 3.6e-57 226.1 231 51.1
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 3.4e-55 219.5 180 62.8
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 1.3e-51 207.6 218 52.3
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 2.1e-49 200.3 150 68.7
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 1.0e-43 181.4 242 43.8
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 1.1e-42 177.9 164 61.0
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 7.5e-39 165.2 285 42.5
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 3.7e-30 136.3 70 97.1
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 7.5e-23 112.1 67 82.1
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 1.6e-20 104.4 83 68.7
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 5.4e-13 79.3 114 43.0
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 3.5e-12 76.6 47 72.3
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 4.3e-10 69.7 56 62.5


User provided reference genes

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