Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 5.9e-127 457.6 239 100.0
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 2.6e-119 432.2 238 93.3
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 7.2e-109 397.5 237 88.2
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 7.2e-109 397.5 237 88.2
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 7.8e-79 297.7 237 70.9
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 2.0e-71 273.1 239 66.9
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 8.9e-51 204.5 253 49.0
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 2.0e-50 203.4 252 48.8
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 2.2e-49 199.9 247 49.0
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 7.1e-48 194.9 249 50.6
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 9.2e-48 194.5 249 47.4
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 2.7e-47 193.0 252 50.8
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 1.3e-46 190.7 266 47.7
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 8.7e-46 188.0 200 53.5
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 2.5e-45 186.4 237 49.4
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 2.5e-45 186.4 251 48.2
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 5.6e-45 185.3 244 50.4
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 7.3e-45 184.9 247 48.6
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 9.6e-45 184.5 268 44.8
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 2.1e-44 183.3 239 51.5
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 2.1e-44 183.3 258 45.3
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 4.7e-44 182.2 250 46.0
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 5.2e-43 178.7 236 47.0
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 6.9e-43 178.3 246 47.6
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 9.0e-43 177.9 243 48.6
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 3.4e-42 176.0 243 49.4
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 7.6e-42 174.9 242 48.3
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 1.7e-41 173.7 237 47.3
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 4.9e-41 172.2 239 44.4
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 8.4e-41 171.4 249 43.4
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 1.9e-40 170.2 246 45.5
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 1.9e-40 170.2 234 45.7
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 2.4e-40 169.9 241 47.7
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 4.2e-40 169.1 245 48.6
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 7.1e-40 168.3 255 46.3
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 7.1e-40 168.3 245 47.3
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 9.3e-40 167.9 236 44.1
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 3.5e-39 166.0 246 47.6
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 6.0e-39 165.2 229 45.0
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 1.0e-38 164.5 263 46.0
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 2.3e-38 163.3 267 44.9
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 2.3e-38 163.3 243 46.1
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 3.0e-38 162.9 239 44.8
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 3.9e-38 162.5 228 47.4
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 6.6e-38 161.8 239 46.9
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 1.1e-37 161.0 234 47.0
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.1e-37 161.0 243 46.5
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 1.1e-37 161.0 243 47.7
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 2.5e-37 159.8 257 42.8
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 2.5e-37 159.8 257 43.2
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 4.3e-37 159.1 233 42.5
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 9.6e-37 157.9 232 42.7
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 9.6e-37 157.9 237 45.6
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 1.3e-36 157.5 230 45.7
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 2.1e-36 156.8 230 45.7
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 2.1e-36 156.8 237 48.9
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 3.6e-36 156.0 234 44.0
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 3.6e-36 156.0 232 44.8
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 8.1e-36 154.8 228 46.1
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 8.1e-36 154.8 228 46.1
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 3.1e-35 152.9 257 42.8
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 3.1e-35 152.9 238 42.4
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 4.0e-35 152.5 245 41.6
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 4.0e-35 152.5 232 46.6
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 4.0e-35 152.5 232 42.2
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 4.0e-35 152.5 234 47.0
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 5.3e-35 152.1 241 44.0
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 9.0e-35 151.4 267 41.6
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 1.2e-34 151.0 235 44.3
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 1.2e-34 151.0 244 40.6
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 1.5e-34 150.6 267 41.6
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.6e-34 149.8 242 43.4
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 5.8e-34 148.7 247 44.1
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 1.7e-33 147.1 170 49.4
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 2.2e-33 146.7 174 51.7
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 2.9e-33 146.4 240 45.0
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 2.9e-33 146.4 167 52.1
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 3.8e-33 146.0 232 42.7
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 1.9e-32 143.7 237 43.0
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 2.4e-32 143.3 232 43.1
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 4.2e-32 142.5 269 40.5
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 5.4e-32 142.1 84 78.6
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 5.4e-32 142.1 253 40.3
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 5.4e-32 142.1 237 42.6
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 5.4e-32 142.1 241 43.2
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 7.1e-32 141.7 200 45.0
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 9.3e-32 141.4 240 41.7
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 9.3e-32 141.4 170 48.2
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 1.2e-31 141.0 206 45.6
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 1.2e-31 141.0 83 77.1
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.6e-31 140.6 235 43.4
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 2.1e-31 140.2 238 42.9
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 2.7e-31 139.8 137 55.5
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 2.7e-31 139.8 243 42.4
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 3.5e-31 139.4 176 47.7
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.5e-31 139.4 237 41.8
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 3.5e-31 139.4 232 42.7
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 4.6e-31 139.0 235 40.9
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 2.3e-30 136.7 234 39.7
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 3.9e-30 136.0 234 39.7
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 8.7e-30 134.8 264 41.3
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.1e-29 134.4 235 40.4
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.5e-29 134.0 251 37.8
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 1.5e-29 134.0 95 71.6
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.5e-29 134.0 177 46.3
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 3.3e-29 132.9 166 48.8
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 3.3e-29 132.9 225 41.3
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 4.3e-29 132.5 227 40.5
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 4.3e-29 132.5 227 40.5
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 5.6e-29 132.1 235 40.0
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 7.4e-29 131.7 170 48.8
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 1.3e-28 131.0 238 41.6
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.3e-28 131.0 238 42.0
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 1.6e-28 130.6 86 69.8
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 2.8e-28 129.8 234 38.9
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 4.8e-28 129.0 232 39.7
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 1.8e-27 127.1 207 41.5
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 2.4e-27 126.7 235 40.4
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 3.1e-27 126.3 192 40.6
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 3.1e-27 126.3 232 38.4
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 5.3e-27 125.6 167 43.7
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 5.3e-27 125.6 167 43.7
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 3.4e-26 122.9 170 43.5
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 3.4e-26 122.9 140 50.7
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 9.9e-26 121.3 239 40.6
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 9.3e-24 114.8 217 37.8
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 9.3e-24 114.8 116 58.6
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 2.7e-23 113.2 277 33.6
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 1.0e-22 111.3 67 77.6
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 1.3e-22 110.9 88 62.5
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 2.3e-22 110.2 251 35.5
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 3.9e-22 109.4 77 66.2
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 5.1e-22 109.0 246 38.6
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 6.7e-22 108.6 113 49.6
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 3.7e-20 102.8 121 46.3
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.5e-18 97.4 130 43.8
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 2.2e-17 93.6 167 40.1
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 3.8e-17 92.8 200 35.5
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.6e-15 87.4 116 43.1
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 2.7e-15 86.7 229 34.1
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 1.1e-13 81.3 117 46.2
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 4.5e-10 69.3 188 30.3
SalBow1G0370 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.2e-09 67.0 170 31.2
SalBow7G4186 Salvia bowleyana HOM05D000074 ORTHO05D000220 2.2e-09 67.0 193 30.1
BcaC08g44096 Brassica carinata HOM05D004801 ORTHO05D005747 8.8e-06 55.1 108 39.8


User provided reference genes

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