Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 6.6e-105 384.0 191 100.0
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 3.0e-97 358.6 191 95.3
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 4.0e-94 348.2 191 92.1
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.4e-91 339.7 192 90.6
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 5.2e-86 321.2 191 85.9
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.4e-83 313.2 188 81.9
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 5.4e-83 311.2 191 80.6
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 6.0e-82 307.8 191 79.6
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 7.8e-82 307.4 176 85.2
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 8.6e-81 303.9 191 78.5
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 5.6e-80 301.2 190 78.9
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 9.6e-80 300.4 191 77.5
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.2e-79 300.1 189 78.8
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.6e-79 299.7 190 77.4
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.6e-79 299.7 190 76.3
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 2.1e-79 299.3 188 79.3
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 2.8e-79 298.9 188 79.3
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 2.8e-79 298.9 189 78.8
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.8e-79 298.9 189 79.4
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.8e-79 298.9 190 76.8
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.1e-78 297.0 198 74.7
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-78 297.0 198 74.7
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.8e-78 296.2 190 77.4
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.4e-78 295.8 191 76.4
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 8.9e-78 293.9 191 77.0
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.5e-77 293.1 188 77.7
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 2.0e-77 292.7 192 76.0
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 7.6e-77 290.8 188 72.9
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.3e-76 290.0 175 81.7
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 2.2e-76 289.3 178 78.7
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 2.9e-76 288.9 190 73.2
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 6.4e-76 287.7 188 76.6
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 6.4e-76 287.7 188 76.6
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.9e-75 286.2 177 78.5
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 2.4e-75 285.8 175 81.1
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 3.2e-75 285.4 188 75.5
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 3.2e-75 285.4 188 75.5
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 3.2e-75 285.4 188 76.6
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 4.2e-75 285.0 188 75.5
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 4.2e-75 285.0 175 80.0
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 5.4e-75 284.6 188 75.5
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 7.1e-75 284.3 188 75.5
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.6e-74 283.1 176 77.8
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 2.7e-74 282.3 188 72.9
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 6.0e-74 281.2 188 74.5
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 7.8e-74 280.8 188 73.9
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 7.8e-74 280.8 185 72.4
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.3e-73 280.0 176 79.5
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 1.7e-73 279.6 175 77.1
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 3.0e-73 278.9 186 74.7
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.0e-73 278.9 174 78.2
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.0e-73 278.9 165 81.8
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 5.1e-73 278.1 175 78.3
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.1e-72 276.9 188 71.8
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.5e-72 276.6 175 77.7
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.5e-72 276.6 175 77.7
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.5e-72 276.6 188 72.3
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 1.9e-72 276.2 175 77.1
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 2.5e-72 275.8 174 78.7
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 3.3e-72 275.4 190 71.1
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 3.3e-72 275.4 184 74.5
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 5.6e-72 274.6 187 72.7
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.6e-71 273.1 160 84.4
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.6e-71 273.1 175 77.1
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 3.6e-71 271.9 178 77.0
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 3.6e-71 271.9 190 73.2
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 4.8e-71 271.6 188 73.4
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.1e-70 270.4 191 71.7
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 2.4e-70 269.2 187 69.5
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 3.1e-70 268.9 175 72.6
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 5.3e-70 268.1 176 74.4
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 6.9e-70 267.7 184 72.8
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.9e-70 267.7 175 73.7
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 6.9e-70 267.7 187 69.0
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 9.0e-70 267.3 189 72.5
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.2e-69 266.9 187 69.0
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.2e-69 266.9 187 69.0
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.5e-69 266.5 187 69.0
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.0e-69 266.2 187 70.1
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.0e-69 266.2 185 69.7
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 5.8e-69 264.6 171 74.9
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 5.8e-69 264.6 175 72.6
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.3e-68 263.5 172 76.2
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.3e-68 263.5 175 72.6
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 2.9e-68 262.3 189 69.8
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 4.9e-68 261.5 189 72.0
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 8.4e-68 260.8 177 70.1
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.9e-67 259.6 166 74.1
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 3.2e-67 258.8 158 81.0
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 9.3e-67 257.3 165 76.4
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 2.7e-66 255.8 175 70.9
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 3.5e-66 255.4 162 76.5
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.3e-65 253.4 164 75.6
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.3e-65 253.4 170 74.1
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.3e-65 253.4 186 60.8
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 3.0e-65 252.3 165 72.1
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.1e-64 250.4 175 72.0
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 7.4e-64 247.7 164 73.8
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.3e-63 246.9 175 68.0
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.6e-63 246.5 160 73.8
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 2.1e-63 246.1 165 75.2
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 2.8e-63 245.7 163 74.2
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 3.6e-63 245.4 160 75.0
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 3.6e-63 245.4 160 75.0
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.6e-63 245.4 172 72.1
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 4.8e-63 245.0 162 74.1
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.1e-62 243.8 178 70.2
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.8e-62 243.0 162 71.6
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 3.1e-62 242.3 174 70.1
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 3.1e-62 242.3 175 65.7
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 4.0e-62 241.9 172 69.2
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.2e-61 240.4 162 71.0
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.5e-61 240.0 165 71.5
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 2.6e-61 239.2 172 68.6
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 3.4e-61 238.8 175 68.0
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 3.4e-61 238.8 174 70.1
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.8e-60 235.3 161 70.8
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 6.4e-60 234.6 162 71.0
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 6.4e-60 234.6 162 71.0
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.1e-59 233.8 172 66.9
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.1e-59 233.8 175 64.6
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.4e-59 232.6 162 71.6
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 9.3e-59 230.7 162 66.7
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.6e-58 229.9 172 66.9
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.6e-58 229.9 170 66.5
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 3.5e-58 228.8 177 63.8
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 7.9e-58 227.6 163 70.6
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 7.9e-58 227.6 163 70.6
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.8e-57 226.5 173 65.3
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.3e-57 226.1 175 63.4
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.0e-57 225.7 163 69.9
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.0e-57 225.7 163 69.9
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 3.3e-56 222.2 136 75.7
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 9.6e-56 220.7 136 75.7
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 9.6e-56 220.7 177 64.4
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.1e-55 217.6 177 65.0
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 6.9e-54 214.5 187 58.8
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 9.0e-54 214.2 159 66.7
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 9.0e-54 214.2 147 68.7
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.4e-53 212.2 129 80.6
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 4.9e-52 208.4 125 80.8
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.9e-51 206.5 168 64.9
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 4.2e-51 205.3 161 59.0
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 7.1e-51 204.5 162 60.5
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.2e-50 203.8 155 65.2
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 2.1e-50 203.0 177 61.6
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.7e-50 202.6 181 56.4
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 3.5e-50 202.2 165 61.8
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 6.0e-50 201.4 162 61.7
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.9e-49 198.7 159 59.7
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 8.7e-49 197.6 164 57.9
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 5.7e-48 194.9 131 75.6
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 8.2e-47 191.0 190 55.8
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 6.9e-46 188.0 165 53.9
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 5.9e-45 184.9 132 68.9
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 7.6e-45 184.5 166 61.4
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.2e-44 183.0 125 70.4
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.4e-43 180.3 161 57.8
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.1e-42 176.4 181 55.8
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.7e-42 176.0 171 55.6
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.6e-42 175.3 181 55.8
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 7.4e-40 167.9 116 72.4
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 8.2e-39 164.5 144 54.9
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.9e-37 158.3 97 77.3
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 9.4e-35 151.0 90 77.8
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 5.7e-32 141.7 177 48.6
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 4.1e-30 135.6 96 65.6
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 5.9e-29 131.7 93 66.7
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.1e-27 127.5 95 68.4
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.1e-27 127.5 150 43.3
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.2e-26 124.0 73 76.7
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.1e-18 96.7 69 72.5
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.7e-18 95.5 79 55.7
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 9.1e-14 81.3 106 46.2
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-12 77.8 69 55.1
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.5e-11 73.2 37 81.1
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 2.7e-10 69.7 39 74.4
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 1.2e-08 64.3 80 45.0
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 2.0e-08 63.5 109 32.1
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 9.8e-08 61.2 172 28.5
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 1.7e-07 60.5 32 81.2
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 1.8e-06 57.0 32 78.1
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 4.1e-06 55.8 61 39.3
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 5.4e-06 55.5 32 75.0


User provided reference genes

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