Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 2.1e-146 522.3 257 100.0
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 4.1e-142 508.1 257 97.3
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 1.9e-139 499.2 257 95.3
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 2.2e-132 475.7 257 89.5
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 3.6e-130 468.4 257 88.3
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 2.1e-114 416.0 250 79.2
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 1.7e-111 406.4 253 79.1
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 8.3e-111 404.1 254 77.6
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 2.0e-109 399.4 252 73.8
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 1.7e-108 396.4 253 75.5
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 3.8e-108 395.2 246 76.8
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 3.8e-108 395.2 253 74.7
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 5.0e-108 394.8 253 77.1
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 1.5e-107 393.3 256 72.3
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 4.2e-107 391.7 251 75.7
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 9.5e-107 390.6 252 74.6
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.2e-106 390.2 253 75.9
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 1.6e-106 389.8 253 75.9
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 1.6e-106 389.8 251 74.5
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 4.7e-106 388.3 246 74.0
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.0e-105 387.1 253 75.5
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 2.3e-105 386.0 256 72.3
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 2.3e-105 386.0 252 73.4
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 6.8e-105 384.4 251 73.7
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 6.8e-105 384.4 254 73.6
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 8.8e-105 384.0 248 73.8
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 1.5e-104 383.3 257 74.3
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 2.6e-104 382.5 252 74.6
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 3.4e-104 382.1 253 75.1
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 4.4e-104 381.7 252 72.2
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 5.7e-104 381.3 253 75.1
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 5.7e-104 381.3 244 75.4
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 5.7e-104 381.3 252 73.0
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 9.8e-104 380.6 252 72.6
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 1.3e-103 380.2 251 74.9
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 1.3e-103 380.2 251 74.9
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 4.9e-103 378.3 251 72.9
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 4.9e-103 378.3 252 71.4
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 1.1e-102 377.1 252 71.4
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 1.4e-102 376.7 252 72.6
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 1.8e-102 376.3 252 72.6
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 2.4e-102 375.9 252 71.4
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 7.0e-102 374.4 252 71.8
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 7.0e-102 374.4 252 70.6
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 9.2e-102 374.0 251 70.9
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 1.6e-101 373.2 251 72.1
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 3.5e-101 372.1 258 71.3
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 3.5e-101 372.1 258 71.3
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 4.5e-101 371.7 252 71.4
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 7.7e-101 370.9 235 75.3
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 1.7e-100 369.8 248 71.0
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 2.9e-100 369.0 251 69.7
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 6.6e-100 367.9 249 71.1
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 2.5e-99 365.9 254 69.3
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 3.3e-99 365.5 245 70.6
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 5.6e-99 364.8 258 69.8
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 5.6e-99 364.8 260 70.4
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 7.3e-99 364.4 225 76.9
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 1.2e-98 363.6 245 69.8
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 4.7e-98 361.7 255 68.2
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 2.3e-97 359.4 248 69.0
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 2.3e-97 359.4 220 76.4
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 3.0e-97 359.0 250 70.8
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 4.0e-97 358.6 251 68.1
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 4.0e-97 358.6 217 77.9
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 6.8e-97 357.8 225 74.7
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 6.8e-97 357.8 217 77.9
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 2.0e-96 356.3 217 77.0
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 2.6e-96 355.9 217 77.9
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 3.4e-96 355.5 251 68.1
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 3.4e-96 355.5 260 69.2
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 8.3e-95 350.9 242 69.0
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 2.4e-94 349.4 217 76.5
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 4.1e-94 348.6 249 65.9
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 1.2e-93 347.1 259 67.6
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 2.7e-93 345.9 256 66.8
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 4.6e-93 345.1 213 76.1
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 1.0e-92 344.0 245 66.9
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 1.0e-92 344.0 217 74.7
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 8.6e-92 340.9 248 66.1
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 1.1e-91 340.5 245 66.1
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 1.5e-91 340.1 219 75.8
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 1.9e-91 339.7 227 71.8
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 1.2e-90 337.0 220 71.8
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 1.2e-90 337.0 213 75.6
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 2.1e-90 336.3 213 74.2
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 2.8e-90 335.9 255 65.5
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 3.6e-90 335.5 245 66.9
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 3.6e-90 335.5 245 66.9
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 3.6e-90 335.5 245 66.9
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 6.8e-89 331.3 248 65.3
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 8.9e-89 330.9 213 72.8
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 1.2e-88 330.5 228 69.7
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 1.5e-88 330.1 245 66.5
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 2.0e-88 329.7 245 65.7
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 3.4e-88 328.9 250 64.0
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 5.8e-88 328.2 244 65.2
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 1.3e-87 327.0 238 66.4
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 1.3e-87 327.0 244 67.2
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 1.3e-87 327.0 256 62.5
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 1.7e-87 326.6 247 64.8
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 2.2e-87 326.2 245 64.9
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 6.4e-87 324.7 213 72.3
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 8.3e-87 324.3 213 71.8
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 2.4e-86 322.8 244 66.4
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 2.4e-86 322.8 249 63.5
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 5.4e-86 321.6 250 61.2
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 2.7e-85 319.3 247 64.0
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 8.6e-84 314.3 245 62.0
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 7.3e-83 311.2 209 72.7
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 3.6e-82 308.9 247 64.0
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 7.1e-78 294.7 252 59.5
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 1.2e-77 293.9 189 72.5
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 5.1e-76 288.5 248 57.7
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 5.6e-75 285.0 210 65.2
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 7.3e-75 284.6 222 61.7
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 1.2e-72 277.3 246 56.5
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 1.9e-70 270.0 244 58.6
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 9.3e-62 241.1 186 63.4
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 3.6e-58 229.2 163 69.3
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 3.5e-53 212.6 139 73.4
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 3.0e-44 183.0 190 53.2
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 8.7e-44 181.4 218 45.4
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 7.4e-43 178.3 144 61.1
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 1.5e-40 170.6 114 71.9
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 1.3e-31 141.0 173 46.2
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 4.6e-29 132.5 190 42.1
Zm00001eb356470 Zea mays HOM05D006345 ORTHO05D007428 5.1e-28 129.0 103 59.2
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 2.2e-10 70.5 44 68.2
ATR0006G036 Amborella trichopoda HOM05D006345 ORTHO05D007428 3.7e-10 69.7 51 62.7
GSVIVG01023955001 Vitis vinifera HOM05D000593 ORTHO05D000562 2.9e-07 60.1 39 71.8


User provided reference genes

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