Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 2.1e-166 589.0 297 100.0
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 2.7e-158 562.0 297 95.6
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 3.3e-143 511.9 292 90.1
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 4.7e-110 401.7 287 70.0
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 3.1e-109 399.1 289 69.6
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 1.2e-108 397.1 278 70.1
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 4.9e-107 391.7 283 68.9
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 6.4e-107 391.3 284 68.7
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 8.4e-107 391.0 285 68.8
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 7.1e-106 387.9 292 68.2
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 2.7e-105 386.0 274 69.3
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 3.5e-105 385.6 282 69.9
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 4.6e-105 385.2 291 67.4
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 2.3e-104 382.9 285 66.3
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 5.1e-104 381.7 285 67.0
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 1.9e-103 379.8 297 68.0
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 2.5e-103 379.4 276 68.1
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 7.3e-103 377.9 280 66.4
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 2.1e-102 376.3 289 65.4
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 8.1e-102 374.4 306 63.4
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 1.1e-101 374.0 284 66.2
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 1.1e-101 374.0 275 68.0
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 1.8e-101 373.2 265 69.4
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 2.4e-101 372.9 287 65.9
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 1.2e-100 370.5 275 67.6
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 2.0e-100 369.8 292 65.1
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 4.4e-100 368.6 287 64.8
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 1.1e-98 364.0 260 68.8
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.9e-98 363.2 275 66.5
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 3.2e-98 362.5 282 64.5
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 3.2e-98 362.5 246 71.1
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 5.4e-98 361.7 343 56.9
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 1.2e-97 360.5 264 69.3
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 2.1e-97 359.8 291 64.3
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 2.3e-96 356.3 261 65.1
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 3.9e-96 355.5 285 63.5
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 3.9e-96 355.5 297 61.6
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 6.6e-96 354.8 276 62.7
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 6.6e-96 354.8 292 61.6
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 2.5e-95 352.8 264 67.8
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 3.3e-95 352.4 279 64.9
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 3.3e-95 352.4 291 62.2
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 4.3e-95 352.1 293 61.8
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 5.6e-95 351.7 279 64.9
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 5.6e-95 351.7 276 62.0
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 9.6e-95 350.9 285 63.5
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 1.3e-94 350.5 268 64.6
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.3e-94 350.5 294 61.6
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.3e-94 350.5 294 61.6
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 1.6e-94 350.1 294 60.9
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 2.1e-94 349.7 283 63.3
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 3.6e-94 349.0 301 59.5
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 4.8e-94 348.6 269 64.3
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 8.1e-94 347.8 301 60.8
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 8.1e-94 347.8 283 63.3
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 1.4e-93 347.1 247 68.8
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 4.0e-93 345.5 228 73.2
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 6.9e-93 344.7 318 59.1
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 1.5e-92 343.6 252 63.1
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 2.6e-92 342.8 248 67.3
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 5.8e-92 341.7 300 60.7
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 9.9e-92 340.9 271 64.9
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 9.9e-92 340.9 229 71.2
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.3e-91 340.5 306 58.2
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 1.7e-91 340.1 302 59.9
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.2e-91 339.7 254 68.1
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 2.9e-91 339.3 228 71.9
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 8.4e-91 337.8 273 60.4
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 1.9e-90 336.7 292 61.6
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 5.4e-90 335.1 281 60.9
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 1.6e-89 333.6 285 62.1
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 3.5e-89 332.4 229 68.1
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 6.0e-89 331.6 276 59.1
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 3.0e-88 329.3 295 56.6
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 1.1e-87 327.4 288 61.1
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 1.9e-87 326.6 256 60.9
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 2.5e-87 326.2 259 62.5
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 8.1e-86 321.2 253 60.5
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 1.1e-85 320.9 228 68.9
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 4.0e-85 318.9 228 68.0
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 9.0e-85 317.8 228 65.8
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 9.9e-84 314.3 254 62.6
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 2.2e-83 313.2 229 65.1
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 2.3e-80 303.1 203 72.9
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 2.8e-78 296.2 215 67.4
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 3.8e-75 285.8 239 61.5
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 4.9e-75 285.4 218 66.5
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 7.9e-73 278.1 204 66.7
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 1.6e-70 270.4 266 55.6
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 6.3e-70 268.5 205 65.4
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 3.1e-69 266.2 247 54.7
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 3.1e-69 266.2 202 64.9
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 3.4e-68 262.7 246 52.8
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 5.0e-67 258.8 288 48.3
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 5.1e-64 248.8 184 67.4
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 8.8e-64 248.1 262 50.4
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 3.7e-62 242.7 183 63.4
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 6.3e-62 241.9 167 70.7
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 1.3e-59 234.2 218 58.7
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 1.7e-59 233.8 247 49.0
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 4.2e-58 229.2 207 58.0
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 3.7e-46 189.5 134 66.4
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 1.6e-44 184.1 289 41.9
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 6.5e-43 178.7 276 42.4
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.9e-34 150.6 110 68.2
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 7.2e-34 148.7 185 44.3
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 3.6e-25 119.8 98 61.2
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 2.3e-24 117.1 98 60.2
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 2.6e-23 113.6 339 28.9
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 9.8e-23 111.7 299 31.4
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 1.3e-14 84.7 103 46.6
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 3.7e-14 83.2 102 46.1
Ca_28940_v3 Cicer arietinum L. HOM05D001568 ORTHO05D148655 1.0e-11 75.1 239 24.7
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 8.6e-11 72.0 47 70.2
RcHm_v2.0_Chr6g0248571 Rosa chinensis HOM05D001568 ORTHO05D008804 5.2e-08 62.8 100 39.0
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 2.0e-07 60.8 49 55.1
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 5.8e-07 59.3 49 51.0
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 5.8e-07 59.3 49 51.0
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 5.8e-07 59.3 49 51.0
Haze_10306 Corylus avellana HOM05D000031 ORTHO05D001033 2.2e-06 57.4 64 46.9


User provided reference genes

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