Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 0.0e+00 1205.3 635 100.0
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 0.0e+00 1139.4 645 94.0
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 1.5e-302 1042.3 756 77.0
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 4.1e-276 954.5 642 81.9
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 5.2e-199 698.4 648 63.1
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 4.6e-195 685.3 661 59.8
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 9.6e-193 677.6 650 60.6
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 1.5e-185 653.7 645 58.4
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 7.3e-185 651.4 648 59.4
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 1.6e-184 650.2 658 58.4
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.1e-184 649.8 654 58.0
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 4.8e-184 648.7 654 58.0
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 8.1e-184 647.9 654 57.8
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 4.0e-183 645.6 657 57.8
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 4.0e-183 645.6 648 57.4
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 7.6e-182 641.3 637 57.6
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 3.2e-180 636.0 655 56.9
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 4.2e-180 635.6 656 57.3
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 1.2e-179 634.0 639 56.7
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 1.2e-179 634.0 653 56.4
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 4.6e-179 632.1 642 57.5
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 6.0e-179 631.7 656 57.0
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 1.3e-178 630.6 657 56.9
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 3.3e-177 625.9 653 57.0
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 5.6e-177 625.2 641 56.8
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 2.1e-176 623.2 647 56.1
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 4.8e-176 622.1 689 54.4
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 1.8e-175 620.2 659 55.1
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 9.0e-175 617.8 667 54.4
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 9.0e-175 617.8 667 54.4
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 2.0e-174 616.7 659 55.1
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 6.0e-171 605.1 644 55.3
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 1.0e-170 604.4 683 53.4
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.8e-170 603.6 716 52.2
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 2.3e-170 603.2 644 55.0
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 3.9e-170 602.4 645 56.0
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 1.1e-169 600.9 636 56.1
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 3.3e-169 599.4 632 56.8
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 5.6e-169 598.6 643 55.8
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 9.6e-169 597.8 638 56.3
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 1.4e-167 594.0 661 53.9
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 4.0e-167 592.4 646 54.2
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 6.9e-167 591.7 675 53.3
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 2.0e-166 590.1 616 55.2
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 7.6e-166 588.2 637 56.0
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 6.5e-165 585.1 647 53.6
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 1.5e-161 573.9 525 60.8
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 7.4e-161 571.6 652 51.7
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 4.8e-160 568.9 652 51.5
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.1e-159 567.8 798 46.9
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 1.4e-159 567.4 657 51.6
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 1.7e-157 560.5 647 51.2
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 1.4e-156 557.4 649 51.2
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.2e-155 554.3 640 51.9
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 1.2e-155 554.3 684 51.5
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 3.9e-154 549.3 648 51.9
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 3.3e-153 546.2 644 52.0
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 5.3e-151 538.9 597 53.4
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 2.6e-150 536.6 626 52.2
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.7e-149 533.9 597 55.1
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 5.5e-148 528.9 669 49.2
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 3.0e-146 523.1 642 49.7
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 5.1e-146 522.3 687 47.0
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 6.7e-146 521.9 642 49.8
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 2.0e-145 520.4 640 49.4
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 1.7e-144 517.3 642 48.8
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 4.8e-144 515.8 675 47.1
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 5.3e-143 512.3 647 48.1
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 5.9e-142 508.8 642 48.4
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 2.9e-141 506.5 672 46.7
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 1.1e-140 504.6 672 46.7
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 7.2e-140 501.9 695 45.5
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 1.8e-138 497.3 672 46.1
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 2.3e-138 496.9 638 48.7
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 6.7e-138 495.4 655 49.6
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 8.8e-138 495.0 515 55.1
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 8.2e-136 488.4 695 44.6
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 1.6e-134 484.2 661 47.4
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.2e-129 468.0 649 46.1
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 1.7e-128 464.2 446 59.0
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 1.1e-127 461.5 452 57.7
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 7.0e-127 458.8 627 46.3
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 7.7e-126 455.3 649 45.3
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 5.0e-125 452.6 469 54.8
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 1.5e-124 451.1 643 44.2
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 1.7e-117 427.6 420 57.1
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 2.9e-117 426.8 592 45.6
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 2.8e-112 410.2 687 40.8
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 1.1e-111 408.3 641 41.5
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 3.8e-109 399.8 661 41.1
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 8.9e-106 388.7 670 40.0
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 1.3e-104 384.8 656 43.8
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 4.6e-102 376.3 522 47.5
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 2.8e-99 367.1 626 40.3
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 2.3e-98 364.0 657 39.3
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 8.9e-98 362.1 651 39.2
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 5.4e-95 352.8 476 46.8
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 6.0e-94 349.4 497 46.5
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 3.0e-85 320.5 449 46.3
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 2.0e-81 307.8 426 48.4
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 2.2e-80 304.3 494 41.3
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 2.1e-78 297.7 216 71.3
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 5.6e-76 289.7 813 32.2
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 8.1e-67 259.2 512 36.3
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 3.9e-61 240.4 165 75.2
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 1.3e-56 225.3 216 58.3
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 3.2e-55 220.7 321 49.8
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 8.7e-53 212.6 150 75.3
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 2.4e-50 204.5 153 69.3
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 5.3e-50 203.4 316 46.2
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 1.0e-45 189.1 264 49.2
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 4.8e-43 180.3 801 25.3
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 2.0e-41 174.9 213 47.9
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 1.7e-35 155.2 177 51.4
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 1.8e-29 135.2 178 43.3
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 5.1e-29 133.7 500 28.6
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 8.8e-29 132.9 101 68.3
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 4.8e-27 127.1 296 35.8
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 5.0e-24 117.1 78 74.4
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.8e-21 108.6 94 66.0
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 3.0e-21 107.8 103 60.2
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 3.3e-20 104.4 90 68.9
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 1.5e-12 79.0 52 73.1
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 2.8e-11 74.7 47 76.6
Sc18g0007390 Simmondsia chinensis HOM05D006229 ORTHO05D007190 3.7e-11 74.3 109 44.0
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 2.0e-09 68.6 90 44.4
SHI04983 Sapria himalayana HOM05D000023 ORTHO05D000014 2.0e-09 68.6 124 37.9
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.1e-07 62.8 84 44.0
CSS0040212 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D007190 4.7e-06 57.4 41 73.2


User provided reference genes

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