Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 1.5e-251 872.5 455 100.0
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 2.3e-241 838.6 466 94.6
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 8.9e-209 730.3 466 83.0
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 1.8e-177 626.3 464 70.0
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 2.6e-176 622.5 471 70.1
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 1.7e-175 619.8 464 69.4
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 1.7e-175 619.8 468 69.9
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 5.5e-174 614.8 375 85.9
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 8.7e-172 607.4 465 68.2
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 1.1e-171 607.1 465 68.6
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 3.3e-171 605.5 471 68.8
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 7.4e-171 604.4 466 68.9
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 7.4e-171 604.4 466 68.9
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 9.6e-171 604.0 465 67.7
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 9.6e-171 604.0 472 66.7
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 1.6e-170 603.2 466 67.0
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 8.2e-170 600.9 465 68.0
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 1.4e-169 600.1 465 67.7
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 2.4e-169 599.4 465 68.6
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 3.4e-168 595.5 504 64.3
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 4.5e-168 595.1 473 68.7
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 3.2e-166 589.0 464 68.1
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 9.3e-166 587.4 465 66.7
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 1.6e-165 586.6 465 66.2
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 2.1e-165 586.3 465 66.0
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 2.2e-162 576.2 463 66.3
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 6.3e-162 574.7 465 66.0
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 6.3e-162 574.7 472 63.3
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 2.6e-160 569.3 463 64.8
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 3.4e-160 568.9 463 66.7
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 5.9e-160 568.2 466 66.5
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 2.9e-159 565.8 467 64.2
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.9e-159 565.8 463 66.3
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 5.0e-159 565.1 498 62.4
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 5.0e-159 565.1 474 63.5
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 1.9e-158 563.1 497 62.6
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 1.6e-157 560.1 467 63.4
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 2.7e-157 559.3 464 64.2
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 3.6e-157 558.9 469 64.0
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 6.1e-157 558.1 470 63.4
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 1.3e-156 557.0 465 63.0
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 2.3e-156 556.2 460 63.0
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 3.9e-156 555.4 457 63.9
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 5.1e-156 555.1 465 62.8
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 1.1e-155 553.9 467 63.4
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 1.1e-155 553.9 460 62.8
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 5.7e-155 551.6 461 62.9
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 5.7e-155 551.6 488 61.7
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 3.7e-154 548.9 465 61.9
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 1.1e-153 547.4 484 61.6
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 4.1e-153 545.4 459 62.1
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 5.3e-153 545.0 459 62.5
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 6.9e-153 544.7 466 61.6
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 9.1e-153 544.3 461 61.8
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 3.4e-152 542.3 485 61.2
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 5.9e-152 541.6 459 61.7
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 5.9e-152 541.6 459 62.1
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 1.7e-151 540.0 461 61.8
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 3.8e-151 538.9 473 62.6
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 5.0e-151 538.5 465 61.7
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 8.5e-151 537.7 469 62.0
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 1.4e-150 537.0 465 61.5
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 1.9e-150 536.6 461 61.2
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 8.8e-148 527.7 462 61.3
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 1.5e-147 526.9 468 60.7
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 1.3e-146 523.9 462 61.7
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 1.1e-145 520.8 465 60.9
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 6.9e-145 518.1 461 61.2
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 1.5e-144 516.9 484 58.7
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 4.5e-144 515.4 470 58.7
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 7.7e-144 514.6 464 59.3
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 1.7e-143 513.5 467 60.4
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 5.0e-143 511.9 465 59.1
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 5.5e-142 508.4 478 56.3
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 2.7e-141 506.1 465 59.6
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 6.1e-141 505.0 424 65.8
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 1.0e-140 504.2 415 64.3
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 2.0e-139 500.0 465 57.2
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 4.4e-139 498.8 461 59.4
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 7.4e-139 498.0 465 57.6
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 1.7e-138 496.9 465 57.6
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 4.8e-138 495.4 483 55.5
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 9.1e-137 491.1 423 62.4
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 1.6e-136 490.3 402 63.7
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 7.7e-136 488.0 472 56.4
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 7.7e-136 488.0 427 60.4
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 5.0e-135 485.3 476 56.1
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 1.0e-127 461.1 484 52.9
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 1.9e-126 456.8 467 53.5
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 1.9e-126 456.8 467 54.0
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 7.5e-123 444.9 458 53.3
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 2.7e-120 436.4 319 72.4
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 3.3e-118 429.5 398 58.0
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 3.0e-116 422.9 365 63.8
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 1.7e-114 417.2 474 49.8
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 7.0e-113 411.8 322 66.1
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 1.3e-111 407.5 314 69.7
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 6.1e-109 398.7 465 49.5
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 4.3e-102 375.9 513 47.0
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 4.0e-100 369.4 322 60.6
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 3.4e-99 366.3 315 62.9
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 1.4e-97 360.9 347 57.3
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 4.6e-96 355.9 359 54.3
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 1.1e-92 344.7 305 61.6
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.4e-81 307.8 340 50.3
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 4.2e-81 306.2 488 38.1
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 8.7e-79 298.5 264 62.1
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 5.8e-75 285.8 218 67.9
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 1.6e-69 267.7 438 39.0
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 1.5e-59 234.6 498 32.5
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 1.9e-57 227.6 339 44.0
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 3.8e-42 176.8 146 65.1
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 9.4e-41 172.2 489 31.1
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 7.7e-35 152.5 193 49.2
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 1.1e-30 138.7 367 35.1
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 1.1e-28 132.1 500 25.6
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 4.5e-27 126.7 121 59.5
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 3.8e-26 123.6 140 52.1
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 1.0e-23 115.5 84 67.9
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 1.3e-21 108.6 404 24.5
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 6.5e-18 96.3 70 68.6
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 1.1e-17 95.5 70 67.1
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 1.9e-17 94.7 70 67.1
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 1.9e-17 94.7 99 51.5
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-16 92.0 420 24.5
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 1.4e-15 88.6 98 49.0
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 1.4e-07 62.0 65 50.8
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 3.4e-06 57.4 65 47.7


User provided reference genes

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