Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 4.7e-107 392.9 199 100.0
CsaV3_7G010110 Cucumis sativus L. HOM05D007083 ORTHO05D008801 1.8e-95 354.4 199 90.5
ClCG02G005520 Citrullus lanatus HOM05D007083 ORTHO05D008801 1.5e-76 291.6 202 77.7
Sed0019239 Sechium edule HOM05D007083 ORTHO05D008801 3.4e-49 200.7 208 56.2
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 2.7e-46 191.0 168 57.1
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 7.8e-46 189.5 200 53.5
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 5.1e-45 186.8 208 51.0
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 1.1e-44 185.7 184 52.2
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 1.1e-44 185.7 182 51.1
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.4e-42 178.7 204 49.0
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 3.1e-42 177.6 204 48.0
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 9.0e-42 176.0 202 49.5
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 2.0e-41 174.9 174 51.1
TWI31G0787 Tripterygium wilfordii HOM05D007083 ORTHO05D008801 3.4e-41 174.1 183 53.0
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 4.4e-41 173.7 201 49.8
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 4.4e-41 173.7 172 50.0
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 7.6e-41 172.9 193 50.8
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 7.6e-41 172.9 193 50.8
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 2.2e-40 171.4 204 47.5
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 3.8e-40 170.6 179 49.2
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 1.9e-39 168.3 179 48.6
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 2.4e-39 167.9 191 49.7
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 3.2e-39 167.5 201 45.8
Cfa004946 Carpinus fangiana HOM05D007083 ORTHO05D008801 4.2e-39 167.2 161 54.7
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 5.4e-39 166.8 191 49.2
Haze_02465 Corylus avellana HOM05D007083 ORTHO05D008801 1.2e-38 165.6 150 57.3
Lsat_1_v5_gn_0_45320 Lactuca sativa HOM05D007083 ORTHO05D008801 1.2e-38 165.6 183 48.6
Lsat_1_v5_gn_5_117460 Lactuca sativa HOM05D007083 ORTHO05D008801 1.2e-38 165.6 183 48.6
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 2.1e-38 164.9 191 45.5
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 3.5e-38 164.1 183 44.8
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 4.6e-38 163.7 191 49.2
Atru.chr5.2875 Acer truncatum HOM05D007083 ORTHO05D008801 6.0e-38 163.3 180 48.9
Cpa.g.sc109.26 Carica papaya HOM05D007083 ORTHO05D008801 6.0e-38 163.3 195 47.7
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 6.0e-38 163.3 171 46.8
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 2.3e-37 161.4 179 47.5
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 5.1e-37 160.2 183 44.3
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 4.3e-36 157.1 195 47.2
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 7.3e-36 156.4 192 42.2
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 1.6e-35 155.2 186 46.2
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 1.6e-35 155.2 208 42.8
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 1.6e-35 155.2 208 42.8
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 1.6e-35 155.2 189 46.6
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 2.1e-35 154.8 197 46.2
Atru.chr13.1400 Acer truncatum HOM05D007083 ORTHO05D008801 2.8e-35 154.5 180 46.7
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 2.8e-35 154.5 195 45.1
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 6.2e-35 153.3 203 42.4
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 8.1e-35 152.9 161 49.1
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 8.1e-35 152.9 161 49.1
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 8.1e-35 152.9 161 49.1
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 1.1e-34 152.5 175 43.4
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 4.0e-34 150.6 192 44.8
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 4.0e-34 150.6 195 46.7
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 5.3e-34 150.2 172 43.6
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 5.3e-34 150.2 161 46.6
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 4.5e-33 147.1 203 42.4
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 4.5e-33 147.1 191 45.0
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 7.6e-33 146.4 202 42.1
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 2.2e-32 144.8 217 38.7
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 2.9e-32 144.4 202 45.0
Medtr4g068360 Medicago truncatula HOM05D007083 ORTHO05D008801 6.4e-32 143.3 184 45.1
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 1.1e-31 142.5 181 40.9
Potri.009G109001 Populus trichocarpa HOM05D007083 ORTHO05D008801 1.4e-31 142.1 149 46.3
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 1.9e-31 141.7 160 45.6
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 1.9e-31 141.7 184 46.2
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 5.4e-31 140.2 196 42.3
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 1.2e-30 139.0 200 39.5
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 4.6e-30 137.1 187 44.9
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 6.0e-30 136.7 180 40.0
ECA236G1626 Erigeron canadensis HOM05D007083 ORTHO05D008801 7.9e-30 136.3 160 45.0
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 8.7e-29 132.9 180 43.3
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 1.5e-28 132.1 184 41.3
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 1.5e-28 132.1 166 42.8
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 3.3e-28 131.0 182 42.9
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 1.3e-27 129.0 196 39.3
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 1.6e-27 128.6 195 39.0
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 2.8e-27 127.9 183 39.9
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 4.8e-27 127.1 182 37.4
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 6.2e-27 126.7 193 43.5
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 5.3e-26 123.6 183 41.0
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 4.5e-25 120.6 124 42.7
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 1.3e-24 119.0 188 39.4
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 2.2e-24 118.2 184 41.3
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 3.8e-24 117.5 197 37.1
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 1.2e-22 112.5 152 42.8
ATR0598G052 Amborella trichopoda HOM05D007083 ORTHO05D008801 3.9e-21 107.5 158 38.0
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 7.4e-20 103.2 168 38.7
COL.COLO4_17774 Corchorus olitorius HOM05D007083 ORTHO05D008801 2.1e-19 101.7 146 42.5
PSO339G4029 Papaver somniferum HOM05D007083 ORTHO05D008801 8.2e-19 99.8 182 36.3
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 5.3e-18 97.1 136 42.6
PSO384G4964 Papaver somniferum HOM05D007083 ORTHO05D008801 3.4e-17 94.4 182 36.3
Migut.N01212 Erythranthe guttata HOM05D007083 ORTHO05D008801 6.0e-14 83.6 159 37.7
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 5.7e-12 77.0 151 31.8
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 5.7e-12 77.0 151 31.8
Atru.chr6.3406 Acer truncatum HOM05D006931 ORTHO05D008782 5.3e-10 70.5 151 31.1
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 6.9e-10 70.1 137 39.4
Rhsim01G0212700 Rhododendron simsii HOM05D006931 ORTHO05D008782 9.0e-10 69.7 203 28.6
TPR.G8749 Trifolium pratense HOM05D006931 ORTHO05D008782 9.0e-10 69.7 151 33.8
TAR629G3292 Trochodendron aralioides HOM05D006931 ORTHO05D008782 2.0e-09 68.6 151 32.5
Rhsim06G0175400 Rhododendron simsii HOM05D006931 ORTHO05D008782 2.6e-09 68.2 203 28.1
TPR.G10240 Trifolium pratense HOM05D007083 ORTHO05D008801 3.4e-09 67.8 56 53.6
MBI19_g25580_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 7.7e-09 66.6 151 33.8
Eucgr.G01771 Eucalyptus grandis HOM05D006931 ORTHO05D008782 1.0e-08 66.2 151 28.5
Actinidia09786 Actinidia chinensis HOM05D006931 ORTHO05D008782 1.7e-08 65.5 151 31.1
Dinv13895 Davidia involucrata HOM05D002975 ORTHO05D003564 2.9e-08 64.7 153 28.1
Sc07g0001940 Simmondsia chinensis HOM05D006931 ORTHO05D008782 2.9e-08 64.7 151 29.1
SHI10148 Sapria himalayana HOM05D006931 ORTHO05D008782 5.0e-08 63.9 151 32.5
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 6.5e-08 63.5 158 31.0
MBI19_g25579_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 8.5e-08 63.2 148 32.4
SGA_v2.0_scaffold7G03840 Striga asiatica HOM05D002890 ORTHO05D009847 8.5e-08 63.2 155 31.0
Prupe.2G064100 Prunus persica HOM05D002890 ORTHO05D009847 1.1e-07 62.8 153 26.1
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 1.1e-07 62.8 51 54.9
Lalb_Chr01g0001971 Lupinus albus HOM05D002890 ORTHO05D009847 1.4e-07 62.4 153 26.1
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 1.9e-07 62.0 151 29.8
Migut.N01220 Erythranthe guttata HOM05D007675 ORTHO05D009699 1.9e-07 62.0 196 30.6
Hund23024 Selenicereus undatus HOM05D006931 ORTHO05D008782 1.9e-07 62.0 151 31.1
arahy.Tifrunner.gnm1.ann1.NUL68I Arachis hypogaea HOM05D002890 ORTHO05D009847 2.5e-07 61.6 151 26.5
Nitab4.5_0001774g0100 Nicotiana tabacum HOM05D006931 ORTHO05D008782 2.5e-07 61.6 151 27.8
arahy.Tifrunner.gnm1.ann1.GQ8ZCN Arachis hypogaea HOM05D002890 ORTHO05D009847 3.2e-07 61.2 151 26.5
HanXRQChr04g0128461 Helianthus annuus HOM05D007675 ORTHO05D009699 3.2e-07 61.2 160 30.6
Lj8P135T27 Lonicera japonica HOM05D006931 ORTHO05D008782 3.2e-07 61.2 151 28.5
CAN.G630.43 Capsicum annuum HOM05D007675 ORTHO05D009699 4.2e-07 60.8 209 28.7
Sopen07g024110 Solanum pennellii HOM05D006931 ORTHO05D008782 4.2e-07 60.8 149 26.8
PGSC0003DMG400006142 Solanum tuberosum HOM05D006931 ORTHO05D008782 4.2e-07 60.8 149 26.8
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 4.2e-07 60.8 176 27.8
ClCG02G009270 Citrullus lanatus HOM05D006931 ORTHO05D008782 5.5e-07 60.5 150 30.7
Gohir.A01G181200 Gossypium hirsutum HOM05D007675 ORTHO05D009699 5.5e-07 60.5 200 30.0
Aqoxy4G02238_Aqoxy4G02239 Aquilegia oxysepala HOM05D006931 ORTHO05D008782 7.2e-07 60.1 151 28.5
arahy.Tifrunner.gnm1.ann1.59TWC6 Arachis hypogaea HOM05D002890 ORTHO05D009847 7.2e-07 60.1 151 26.5
SalBow3G0197 Salvia bowleyana HOM05D007675 ORTHO05D009699 9.4e-07 59.7 179 29.6
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 9.4e-07 59.7 133 30.8
CAN.G805.1 Capsicum annuum HOM05D006931 ORTHO05D008782 1.2e-06 59.3 149 27.5
Migut.M01318 Erythranthe guttata HOM05D002890 ORTHO05D009847 1.2e-06 59.3 153 26.8
Nn3g20375 Nelumbo nucifera HOM05D006931 ORTHO05D008782 1.2e-06 59.3 151 29.1
Sed0019973 Sechium edule HOM05D006931 ORTHO05D008782 1.2e-06 59.3 150 29.3
COL.COLO4_31777 Corchorus olitorius HOM05D002890 ORTHO05D009847 1.6e-06 58.9 150 29.3
Haze_02434 Corylus avellana HOM05D007675 ORTHO05D009699 1.6e-06 58.9 203 27.1
Hma1.2p1_0253F.1_g103010 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 1.6e-06 58.9 151 29.1
Hma1.2p1_2484F.1_g323040 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 1.6e-06 58.9 151 29.1
Manes.14G133200 Manihot esculenta HOM05D002890 ORTHO05D009847 1.6e-06 58.9 150 28.0
Hund04386 Selenicereus undatus HOM05D006931 ORTHO05D008782 1.6e-06 58.9 151 29.8
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 1.6e-06 58.9 153 26.8
Cfa004966 Carpinus fangiana HOM05D007675 ORTHO05D009699 2.1e-06 58.5 203 28.6
Potri.014G166001 Populus trichocarpa HOM05D006931 ORTHO05D008782 2.1e-06 58.5 149 28.9
PGSC0003DMG400008266 Solanum tuberosum HOM05D007675 ORTHO05D009699 2.7e-06 58.2 211 28.9
Gorai.002G213900 Gossypium raimondii HOM05D007675 ORTHO05D009699 3.6e-06 57.8 197 28.9
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 3.6e-06 57.8 176 29.0
Solyc07g047620.3 Solanum lycopersicum HOM05D006931 ORTHO05D008782 3.6e-06 57.8 149 26.2
Peaxi162Scf00802g00211 Petunia axillaris HOM05D006931 ORTHO05D008782 4.6e-06 57.4 152 27.0
Peaxi162Scf70695g00002 Petunia axillaris HOM05D006931 ORTHO05D008782 4.6e-06 57.4 152 27.0
CSS0032219 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 6.1e-06 57.0 151 27.2
CSS0037608 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 6.1e-06 57.0 151 27.2
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 6.1e-06 57.0 184 32.1
Manes.15G146700 Manihot esculenta HOM05D007675 ORTHO05D009699 6.1e-06 57.0 196 29.6
Peaxi162Scf00427g00116 Petunia axillaris HOM05D007956 ORTHO05D010152 6.1e-06 57.0 159 30.2
vmacro12097 Vaccinium macrocarpon HOM05D006931 ORTHO05D008782 6.1e-06 57.0 151 28.5
Atru.BG.59.p Acer truncatum HOM05D007083 ORTHO05D008801 7.9e-06 56.6 51 58.8
ATR1159G005 Amborella trichopoda HOM05D006931 ORTHO05D008782 7.9e-06 56.6 150 27.3


User provided reference genes

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