Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 4.8e-150 534.6 306 100.0
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 6.5e-139 497.7 306 92.5
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 8.0e-121 437.6 307 81.1
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 1.4e-101 373.6 306 66.0
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 7.4e-66 255.0 314 48.1
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.8e-64 250.4 312 47.4
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 1.8e-64 250.4 314 47.1
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 2.4e-64 250.0 322 46.6
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 6.9e-64 248.4 311 46.0
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 4.5e-63 245.7 324 49.7
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 5.8e-63 245.4 313 46.0
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 2.9e-62 243.0 313 49.8
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 3.8e-62 242.7 316 46.5
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 1.9e-61 240.4 313 47.3
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 1.2e-60 237.7 315 49.8
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.6e-60 237.3 314 46.2
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 2.7e-60 236.5 322 45.7
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 1.3e-59 234.2 323 44.9
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 1.8e-59 233.8 315 49.2
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 3.0e-59 233.0 324 43.5
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 1.5e-58 230.7 312 44.9
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 3.3e-58 229.6 313 43.1
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 7.4e-58 228.4 214 56.1
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 1.6e-57 227.3 335 41.5
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 2.8e-57 226.5 216 56.5
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 3.7e-57 226.1 318 45.0
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 6.3e-57 225.3 312 48.7
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.4e-56 224.2 311 47.3
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.4e-56 224.2 313 42.5
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 1.8e-56 223.8 329 43.2
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 2.4e-56 223.4 312 48.7
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 3.1e-56 223.0 313 42.8
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 3.1e-56 223.0 319 42.6
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 4.1e-56 222.6 313 41.9
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 2.0e-55 220.3 320 42.5
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 2.6e-55 219.9 320 45.0
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 4.5e-55 219.2 321 42.4
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 5.9e-55 218.8 319 42.3
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.0e-54 218.0 214 55.1
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 2.2e-54 216.9 321 46.7
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 2.9e-54 216.5 362 39.8
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 3.8e-54 216.1 313 43.5
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 8.5e-54 214.9 328 42.1
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 1.1e-53 214.5 209 55.5
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 2.5e-53 213.4 314 40.4
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 4.2e-53 212.6 317 42.9
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 5.5e-53 212.2 215 51.2
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 7.2e-53 211.8 219 53.0
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 7.2e-53 211.8 321 42.7
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 1.6e-52 210.7 312 41.7
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 1.6e-52 210.7 315 42.5
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 2.1e-52 210.3 324 41.0
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 2.1e-52 210.3 313 42.5
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 2.7e-52 209.9 312 46.5
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 3.6e-52 209.5 319 40.8
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 3.6e-52 209.5 315 42.2
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 4.6e-52 209.1 313 42.8
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 6.1e-52 208.8 325 40.9
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 1.0e-51 208.0 248 47.2
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 1.4e-51 207.6 317 43.2
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 1.4e-51 207.6 215 53.0
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 3.9e-51 206.1 313 40.3
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 3.9e-51 206.1 342 40.4
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 5.1e-51 205.7 312 40.1
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 3.3e-50 203.0 317 39.4
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 4.3e-50 202.6 215 50.2
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 9.7e-50 201.4 307 42.7
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.7e-49 200.7 312 41.0
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 1.7e-49 200.7 316 39.6
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 2.8e-49 199.9 316 39.6
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 3.7e-49 199.5 315 40.3
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 8.2e-49 198.4 310 45.2
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.4e-48 196.8 311 38.3
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 4.1e-48 196.1 319 39.2
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 5.3e-48 195.7 323 39.6
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 5.3e-48 195.7 226 49.1
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 1.2e-47 194.5 329 38.0
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 2.0e-47 193.7 313 39.3
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 1.7e-46 190.7 312 40.4
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 2.2e-46 190.3 313 39.9
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 5.0e-46 189.1 317 39.1
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 6.5e-46 188.7 323 38.4
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 8.5e-46 188.3 218 46.8
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 1.9e-45 187.2 310 45.2
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 2.5e-45 186.8 317 40.4
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 2.5e-45 186.8 317 40.4
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 3.2e-45 186.4 316 38.3
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 4.2e-45 186.0 303 37.6
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 5.5e-45 185.7 216 49.5
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 7.2e-45 185.3 320 38.1
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 7.2e-45 185.3 320 38.1
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 7.2e-45 185.3 320 38.1
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 7.2e-45 185.3 312 36.9
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 1.6e-44 184.1 313 39.3
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 2.7e-44 183.3 320 38.4
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 3.6e-44 183.0 312 37.5
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 3.6e-44 183.0 313 39.0
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 4.7e-44 182.6 319 38.6
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 4.7e-44 182.6 319 38.6
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 6.1e-44 182.2 323 38.7
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 7.9e-44 181.8 317 37.5
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 1.4e-43 181.0 320 39.4
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 1.8e-43 180.6 314 37.9
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 3.9e-43 179.5 318 37.1
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 4.4e-42 176.0 237 44.7
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 9.7e-42 174.9 321 35.2
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 2.8e-41 173.3 319 37.6
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 4.8e-41 172.6 319 37.9
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 1.1e-40 171.4 312 39.1
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 1.8e-40 170.6 245 39.2
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 2.4e-40 170.2 307 35.8
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 2.4e-40 170.2 319 35.7
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 3.1e-40 169.9 313 36.7
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 4.1e-40 169.5 314 36.6
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 5.3e-40 169.1 314 36.3
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 7.0e-40 168.7 314 35.0
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 2.6e-39 166.8 315 38.1
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 2.6e-39 166.8 309 36.6
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 2.6e-39 166.8 314 36.0
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 4.5e-39 166.0 316 35.8
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 1.0e-38 164.9 314 38.9
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 1.1e-37 161.4 311 36.0
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 4.2e-37 159.5 309 35.3
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 4.2e-37 159.5 308 40.6
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 8.8e-35 151.8 286 36.0
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 3.5e-31 139.8 201 38.3
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.5e-29 133.7 293 33.4
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 3.0e-27 126.7 313 32.3
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 1.2e-26 124.8 258 34.1
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 5.7e-26 122.5 283 35.7
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 4.1e-24 116.3 309 33.0
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 4.1e-24 116.3 309 33.0
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 3.8e-22 109.8 155 42.6
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 6.5e-22 109.0 354 29.7
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.9e-21 107.5 157 43.9
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 9.4e-21 105.1 355 29.3
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 6.1e-20 102.4 363 28.1
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 6.8e-19 99.0 354 28.5
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 4.4e-18 96.3 200 36.0
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 5.7e-18 95.9 146 45.2
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 2.2e-17 94.0 151 41.1
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 6.3e-17 92.4 88 54.5
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 5.9e-15 85.9 130 41.5
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.3e-14 84.0 351 27.4
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 8.6e-14 82.0 386 23.6
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 2.5e-13 80.5 323 29.1
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 5.5e-13 79.3 123 35.8
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.5e-10 71.2 384 22.1
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 1.1e-08 65.1 55 63.6
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 3.2e-08 63.5 87 41.4
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 3.2e-08 63.5 221 33.0
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 4.1e-08 63.2 41 70.7
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 8.6e-06 55.5 79 36.7


User provided reference genes

Program Settings