Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1554.3 767 100.0
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1516.5 767 97.5
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1476.8 839 88.7
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1258.0 677 91.1
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1216.1 786 77.4
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1215.7 781 77.6
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1205.7 778 76.0
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1199.9 777 75.8
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1192.2 776 75.5
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1189.9 776 75.3
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1189.9 778 76.2
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1189.5 774 76.4
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1187.6 776 74.7
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1186.8 777 75.3
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1186.4 776 75.0
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1186.4 763 76.5
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1184.5 778 75.6
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1183.3 778 75.7
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1182.2 781 76.1
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1181.4 778 75.3
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1178.7 763 76.7
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1177.5 779 75.0
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1176.8 771 74.1
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1174.8 769 75.9
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1172.1 771 74.4
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1171.0 785 73.9
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1167.9 774 74.3
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1167.9 817 70.6
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1166.4 774 74.3
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1165.6 789 72.4
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1164.8 785 74.9
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1164.4 776 72.7
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1164.1 776 72.7
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1161.7 766 74.7
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1159.8 776 73.2
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1158.7 778 73.5
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1156.7 769 74.8
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1156.7 778 74.2
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1156.0 769 74.6
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1155.2 769 74.5
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1155.2 769 74.5
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1153.3 775 73.2
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1152.5 777 72.6
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1151.3 776 73.2
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1149.0 774 72.7
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1149.0 774 72.7
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1142.1 774 72.0
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1141.3 771 72.6
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1140.2 820 68.4
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1139.4 753 74.1
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1138.3 774 72.0
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1132.5 774 71.6
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1124.0 764 72.5
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1122.8 773 71.7
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1119.4 790 70.0
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1116.3 775 70.8
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1113.6 775 70.3
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1113.6 775 71.0
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1113.2 775 70.3
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1111.3 764 71.9
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1109.0 776 70.5
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1109.0 778 69.4
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1107.4 778 71.1
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1107.0 787 69.5
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1097.4 775 69.7
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1097.0 776 70.0
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1096.6 777 69.4
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1095.9 804 68.2
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1093.2 777 69.9
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1090.9 776 69.1
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1090.5 776 69.3
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1089.3 777 69.2
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1088.2 774 70.0
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1087.4 776 69.1
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1087.0 774 68.9
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1085.9 764 71.2
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1085.1 777 69.2
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1084.3 782 68.5
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1084.3 778 68.9
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1082.8 780 67.9
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1082.0 776 69.1
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1081.6 775 68.9
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1080.5 786 68.8
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1080.5 774 69.3
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1078.9 775 68.8
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1078.2 787 69.1
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1077.8 775 68.6
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1077.0 776 68.8
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 5.2e-312 1074.7 776 68.4
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 5.2e-312 1073.5 775 69.7
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 4.4e-309 1064.3 775 69.2
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 1.3e-308 1062.8 778 68.6
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 2.8e-308 1061.6 788 68.4
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 5.6e-304 1047.3 760 68.4
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 1.2e-303 1046.2 777 67.6
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 2.9e-292 1008.4 776 65.9
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 2.4e-291 1005.4 773 65.2
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 1.7e-289 999.2 773 63.4
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 8.6e-289 996.9 732 67.6
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 9.5e-280 966.8 751 65.2
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 1.4e-278 963.0 748 63.4
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 7.3e-272 940.6 725 62.8
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 3.9e-241 838.6 595 70.1
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 1.4e-235 820.1 585 71.1
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 7.2e-235 817.8 583 71.2
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 7.7e-229 797.7 515 75.5
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 2.9e-220 769.2 773 52.7
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 1.8e-206 723.4 860 45.8
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 8.3e-191 671.4 469 69.7
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 7.7e-189 664.8 872 42.0
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 2.8e-186 656.4 455 69.7
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 3.2e-166 589.7 373 79.1
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.1e-163 581.3 489 59.7
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 4.9e-135 486.1 637 43.2
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 5.1e-132 476.1 1112 29.5
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 6.3e-114 416.0 296 72.0
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 6.3e-98 362.8 254 68.9
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 5.0e-87 326.6 256 62.1
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 4.8e-82 310.1 197 81.7
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.2e-80 305.4 224 67.9
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 1.5e-78 298.5 220 67.3
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 8.9e-76 289.3 265 57.0
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 5.9e-72 276.6 259 55.2
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 5.9e-72 276.6 259 55.2
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 5.9e-72 276.6 259 55.2
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 2.8e-69 267.7 180 70.6
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.4e-65 254.6 444 34.0
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.5e-62 245.4 162 73.5
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.6e-56 225.3 155 70.3
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 8.1e-53 213.0 132 75.0
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 5.8e-51 206.8 411 34.5
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 9.9e-51 206.1 152 69.1
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 3.3e-46 191.0 137 65.7
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 1.4e-44 185.7 149 59.1
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 9.9e-43 179.5 110 79.1
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.1e-41 176.0 121 71.9
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 1.4e-41 175.6 131 65.6
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 3.2e-41 174.5 110 76.4
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 6.0e-40 170.2 110 75.5
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 6.0e-40 170.2 110 75.5
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 6.6e-39 166.8 110 75.5
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 6.2e-29 133.7 124 57.3
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 6.9e-28 130.2 87 67.8
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 7.9e-24 116.7 102 60.8
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 2.4e-17 95.1 82 54.9
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 1.8e-15 89.0 57 70.2
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 8.7e-15 86.7 60 68.3
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 2.4e-12 78.6 45 77.8
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.9e-06 58.9 54 63.0
ATR0693G070 Amborella trichopoda HOM05D004029 ORTHO05D004613 5.7e-06 57.4 35 68.6
SEGI_32398 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 9.7e-06 56.6 56 51.8


User provided reference genes

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