Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 7.3e-99 364.0 199 100.0
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 6.5e-79 297.7 192 89.1
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 3.0e-76 288.9 205 79.0
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.3e-63 246.9 190 75.3
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 1.4e-54 216.9 169 67.5
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.9e-54 216.5 169 66.3
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 1.9e-54 216.5 165 72.7
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 4.2e-54 215.3 167 66.5
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.5e-54 214.9 167 67.7
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 7.2e-54 214.5 166 67.5
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 7.2e-54 214.5 190 62.1
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.2e-53 213.8 167 67.1
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.2e-53 213.8 164 66.5
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 1.6e-53 213.4 167 64.7
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.1e-53 213.0 160 67.5
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 4.7e-53 211.8 161 66.5
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 6.1e-53 211.5 167 66.5
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 7.9e-53 211.1 166 66.3
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 1.4e-52 210.3 166 66.3
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 1.8e-52 209.9 167 64.1
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 1.8e-52 209.9 166 65.7
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 3.9e-52 208.8 164 68.3
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 3.9e-52 208.8 190 62.1
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 6.7e-52 208.0 166 65.1
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 1.1e-51 207.2 160 67.5
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.6e-51 206.1 167 65.3
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.3e-51 205.7 169 64.5
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.3e-51 205.7 169 64.5
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 5.7e-51 204.9 167 67.7
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.7e-50 203.4 160 64.4
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 2.2e-50 203.0 167 62.3
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 2.2e-50 203.0 166 65.1
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 2.8e-50 202.6 170 62.4
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 2.8e-50 202.6 170 62.4
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 4.8e-50 201.8 181 60.8
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 6.3e-50 201.4 167 63.5
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 8.2e-50 201.1 202 55.4
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 8.2e-50 201.1 167 62.3
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 1.4e-49 200.3 166 62.0
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.4e-49 200.3 167 63.5
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.4e-49 200.3 167 60.5
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.8e-49 199.9 166 63.9
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.8e-49 199.9 160 65.0
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.8e-49 199.9 167 61.1
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 2.4e-49 199.5 166 60.2
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 3.1e-49 199.1 196 56.6
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 3.1e-49 199.1 167 62.3
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 3.1e-49 199.1 173 59.5
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 3.1e-49 199.1 173 59.5
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.1e-49 199.1 166 63.9
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 3.1e-49 199.1 192 58.9
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 5.3e-49 198.4 195 58.5
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 5.3e-49 198.4 185 56.8
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 7.0e-49 198.0 167 60.5
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 9.1e-49 197.6 164 63.4
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 1.6e-48 196.8 167 62.3
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 1.6e-48 196.8 169 59.8
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 1.6e-48 196.8 169 59.8
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 1.6e-48 196.8 169 59.8
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 2.0e-48 196.4 160 61.9
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 2.0e-48 196.4 167 61.1
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 2.0e-48 196.4 164 64.6
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 2.0e-48 196.4 166 59.0
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 2.6e-48 196.1 167 62.3
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 3.5e-48 195.7 164 64.6
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 3.5e-48 195.7 166 62.0
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 3.5e-48 195.7 165 60.6
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 4.5e-48 195.3 195 55.9
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 4.5e-48 195.3 167 62.9
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 5.9e-48 194.9 195 56.9
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 5.9e-48 194.9 167 59.9
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 7.7e-48 194.5 163 62.0
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 7.7e-48 194.5 160 61.2
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 7.7e-48 194.5 160 60.6
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.0e-47 194.1 167 61.1
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.0e-47 194.1 168 63.1
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.7e-47 193.4 169 59.2
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.7e-47 193.4 160 60.0
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 2.2e-47 193.0 164 61.6
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.2e-47 193.0 191 56.5
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 2.9e-47 192.6 159 64.2
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.9e-47 192.6 164 62.8
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 5.0e-47 191.8 164 62.8
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 5.0e-47 191.8 191 55.5
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 5.0e-47 191.8 164 62.8
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 5.0e-47 191.8 167 59.3
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 6.5e-47 191.4 166 61.4
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 6.5e-47 191.4 164 62.8
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 8.5e-47 191.0 164 61.0
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.1e-46 190.7 163 61.3
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 1.1e-46 190.7 166 60.8
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.5e-46 190.3 154 63.6
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 3.2e-46 189.1 164 59.8
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 3.2e-46 189.1 166 60.8
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 9.4e-46 187.6 168 57.1
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.2e-45 187.2 190 53.7
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 1.2e-45 187.2 187 55.1
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.1e-45 186.4 166 59.6
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 2.1e-45 186.4 192 55.2
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.1e-45 186.4 167 59.3
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 2.1e-45 186.4 191 53.9
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 2.1e-45 186.4 191 53.9
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.1e-45 186.4 164 60.4
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 8.0e-45 184.5 160 60.0
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 8.0e-45 184.5 191 52.9
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.0e-44 184.1 208 48.1
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.8e-44 183.3 191 53.4
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 5.2e-44 181.8 183 56.3
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-43 180.6 166 57.2
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.5e-43 180.3 166 57.8
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.6e-43 179.5 177 56.5
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 3.3e-43 179.1 165 56.4
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 4.4e-43 178.7 166 58.4
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 5.7e-43 178.3 156 59.6
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 7.5e-43 177.9 163 56.4
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 1.3e-42 177.2 167 56.3
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.7e-42 176.8 163 60.1
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 2.2e-42 176.4 167 54.5
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.2e-42 176.4 184 51.6
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 3.5e-40 169.1 174 49.4
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 1.3e-39 167.2 161 55.9
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 1.1e-38 164.1 202 47.5
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.2e-38 162.5 166 53.6
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 7.2e-38 161.4 164 56.7
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 6.1e-37 158.3 164 54.3
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.0e-36 155.6 160 51.9
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.3e-34 148.3 166 48.2
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 5.9e-32 141.7 160 50.0
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.0e-31 141.0 160 52.5
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 2.1e-29 133.3 141 56.0
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 6.8e-28 128.3 103 65.0
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 4.4e-27 125.6 103 66.0
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 4.4e-27 125.6 165 43.0
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.1e-25 119.4 170 41.2
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.0e-24 116.7 95 63.2
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.5e-24 115.9 93 63.4
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.1e-22 110.9 122 50.0
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 3.3e-22 109.4 136 44.9
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.3e-22 109.4 163 40.5
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 4.3e-22 109.0 83 65.1
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 5.6e-22 108.6 81 65.4
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 9.5e-22 107.8 96 61.5
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 6.1e-21 105.1 77 67.5
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.4e-19 99.0 81 64.2
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 5.6e-14 82.0 64 60.9
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 2.1e-13 80.1 70 55.7
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.1e-12 76.3 146 37.0
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 3.4e-11 72.8 75 52.0
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.2e-10 70.1 63 50.8
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 6.4e-10 68.6 60 63.3
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 1.9e-06 57.0 60 53.3


User provided reference genes

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